Het-PDB Navi2 (PDB: 6L97)

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Ligands
Code	Name		Style	Show	Link

Non-standard Residues
Code	Name	Show
0DA	2'-deoxy-L-ribo-furanosyl adenosine-5'-monophosphate
0DC	2'-deoxy-L-ribo-furanosyl cytosine-5'-monophosphate
0DG	2'-deoxy-L-ribo-furanosyl guanine-5'-monophosphate
0DT	2'-deoxy-L-ribo-furanosyl thymidine-5'-monophosphate

Glycosylation
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Modification
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Download interaction data: 6L97

Code :

6L97 PDBj RCSB PDB PDBe

Header :

DNA BINDING PROTEIN/DNA

Title :

Complex of DNA polymerase IV and L-DNA duplex

Release Data :

2020-07-08

Compound :

mol_id	molecule	chains	synonym
1	DNA polymerase IV	A,B	Pol IV
	ec: 2.7.7.7

mol_id	molecule	chains
2	DNA (5'-D(P(0DG)P(0DG)P(0DA)P(0DA)P(0DT)P(0DC)P(0DC)P(0DT)P(0DT)P(0DC)P(0DC)P(0DC)P(0DC)P(0DC))-3')	T

mol_id	molecule	chains
3	DNA (5'-D((0DG)P(0DG)P(0DG)P(0DG)P(0DG)P(0DA)P(0DA)P(0DG)P(0DG)P(0DA)P(0DT)P(0DT)P(0DC)P(0DC))-3')	P

Source :

mol_id	organism_scientific	expression_system
1	Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid:273057)	Escherichia coli (taxid:562)
	strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2 gene: dbh, dpo4, SSO2448

mol_id	organism_scientific
2	Synthetic construct (taxid:32630)
	synthetic: yes

mol_id	organism_scientific
3	Synthetic construct (taxid:32630)
	synthetic: yes

Authors :

Chung, H.S., An, J., Hwang, D.

Keywords :

Dpo4, L-DNA duplex, DNA polymerase, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex

Exp. method :

X-RAY DIFFRACTION ( 2.3620 Å )

Citation :

The crystal structure of a natural DNA polymerase complexed with mirror DNA.

An, J.,Choi, J.,Hwang, D. et al.
(2020) Chem.Commun.(Camb.) 56 : 2186 - 2189

Chain :

A, B

UniProt :

Q97W02 (DPO4_SACS2)

Reaction:	EC:	Evidence:
Reaction:	Physiological Direction:	Evidence:
DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate	2.7.7.7	-
	-	-
Cofactor:	Evidence:	Note:
Mg(2+)	-	Binds 2 magnesium ions per subunit.

PDB ID: 6L97