Brand  (β version)

PDB ID: 4IYO

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Ligands
Code Name Style Show Link
0JO 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid PoSSuM
GOL Glycerol PoSSuM
NAK Amino-acrylate PoSSuM
PYR Pyruvic acid PoSSuM
SER Serine PoSSuM
SO4 Sulfate ion PoSSuM
Non-standard Residues
Code Name Show
LLP (2s)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid
Glycosylation
Code Name Emphasize
Modification
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Structure summary

Code : 4IYO   PDBj   RCSB PDB   PDBe
Header : LYASE
Title : Crystal structure of cystathionine gamma lyase from Xanthomonas oryzae pv. oryzae (XometC) in complex with E-site serine, A-site serine, A-site external aldimine structure with aminoacrylate and A-site iminopropionate intermediates
Release Data : 2014-01-29
Compound :
mol_id molecule chains
1 Cystathionine gamma-lyase-like protein A
ec: 4.4.1.1
mol_id molecule chains
2 Cystathionine gamma-lyase-like protein, LYS201A modified B,C,D
ec: 4.4.1.1
Source :
mol_id organism_scientific expression_system
1 Xanthomonas oryzae pv. oryzae  (taxid:291331) Escherichia coli  (taxid:562)
strain: KACC 10331/KXO85
gene: metB, XOCGL, XOO0778
mol_id organism_scientific expression_system
2 Xanthomonas oryzae pv. oryzae  (taxid:291331) Escherichia coli  (taxid:562)
strain: KACC 10331/KXO85
gene: metB, XOCGL, XOO0778
Authors : Ngo, H.P.T., Kim, J.K., Kang, L.W.
Keywords : PLP DEPENDENT ENZYME, LYASE, XOCGL, IMINOPROPIONATE, SERINE, Cys-Met metabolism PLP dependent enzyme, cystathionine gamma lyase, PLP binding
Exp. method : X-RAY DIFFRACTION ( 1.80 Å )
Citation :

PLP undergoes conformational changes during the course of an enzymatic reaction.

Ngo, H.P.,Cerqueira, N.M.,Kim, J.K.  et al.
(2014)  Acta Crystallogr.,Sect.D  70 : 596 - 606

PubMed: 24531493
DOI: 10.1107/S1399004713031283

Reaction

Chain : B, C, D
UniProt : Q5H4T8 (Q5H4T8_XANOR)
Reaction : -
Cofactor: Evidence: Note:
pyridoxal 5'-phosphate ECO:0000256 | ARBA:ARBA00001933
ECO:0000256 | RuleBase:RU362118
-