Brand  (β version)

PDB ID: 1J5E

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Ligands
Code Name Style Show Link
UNX Unknown atom or ion PoSSuM
ZN Zinc ion PoSSuM
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Structure summary

Code : 1J5E   PDBj   RCSB PDB   PDBe
Header : RIBOSOME
Title : Structure of the Thermus thermophilus 30S Ribosomal Subunit
Release Data : 2002-04-12
Compound :
mol_id molecule chains
1 16S ribosomal RNA A
mol_id molecule chains
2 30S RIBOSOMAL PROTEIN S2 B
mol_id molecule chains
3 30S RIBOSOMAL PROTEIN S3 C
mol_id molecule chains
4 30S RIBOSOMAL PROTEIN S4 D
mol_id molecule chains
5 30S RIBOSOMAL PROTEIN S5 E
mol_id molecule chains
6 30S RIBOSOMAL PROTEIN S6 F
mol_id molecule chains
7 30S RIBOSOMAL PROTEIN S7 G
mol_id molecule chains
8 30S RIBOSOMAL PROTEIN S8 H
mol_id molecule chains
9 30S RIBOSOMAL PROTEIN S9 I
mol_id molecule chains
10 30S RIBOSOMAL PROTEIN S10 J
mol_id molecule chains
11 30S RIBOSOMAL PROTEIN S11 K
mol_id molecule chains
12 30S RIBOSOMAL PROTEIN S12 L
mol_id molecule chains
13 30S RIBOSOMAL PROTEIN S13 M
mol_id molecule chains
14 30S RIBOSOMAL PROTEIN S14 N
mol_id molecule chains
15 30S RIBOSOMAL PROTEIN S15 O
mol_id molecule chains
16 30S RIBOSOMAL PROTEIN S16 P
mol_id molecule chains
17 30S RIBOSOMAL PROTEIN S17 Q
mol_id molecule chains
18 30S RIBOSOMAL PROTEIN S18 R
mol_id molecule chains
19 30S RIBOSOMAL PROTEIN S19 S
mol_id molecule chains
20 30S RIBOSOMAL PROTEIN S20 T
mol_id molecule chains
21 30S RIBOSOMAL PROTEIN THX V
Source :
mol_id organism_scientific
1 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
2 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
3 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
4 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
5 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
6 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
7 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
8 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
9 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
10 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
11 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
12 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
13 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
14 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
15 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
16 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
17 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
18 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
19 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
20 Thermus thermophilus  (taxid:274)
mol_id organism_scientific
21 Thermus thermophilus  (taxid:274)
Authors : Wimberly, B.T., Brodersen, D.E., Clemons Jr., W.M., Morgan-Warren, R., Carter, A.P., Vonrhein, C., Hartsch, T., Ramakrishnan, V.
Keywords : 30S RIBOSOMAL SUBUNIT, RIBOSOME
Exp. method : X-RAY DIFFRACTION ( 3.05 Å )
Citation :

Structure of the 30S ribosomal subunit.

Wimberly, B.T.,Brodersen, D.E.,Clemons Jr., W.M.  et al.
(2000)  Nature  407 : 327 - 339

PubMed: 11014182
DOI: 10.1038/35030006

Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics

Carter, A.P.,Clemons Jr., W.M.,Brodersen, D.E.  et al.
(2000)  Nature  407 : 340 - 348

DOI: 10.1038/35030019

Structure of a Bacterial 30S Ribosomal Subunit at 5.5 A Resolution

Clemons Jr., W.M.,May, J.L.C.,Wimberly, B.T.  et al.
(1999)  Nature  400 : 833 - 840

Reaction

Chain : D
UniProt : P80373 (RS4_THET8)
Reaction : -
Cofactor: Evidence: Note:
[4Fe-4S] cluster ECO:0000269 | PubMed:11866529
ECO:0000269 | PubMed:25775268
ECO:0000269 | PubMed:26792896
Binds 1 zinc ion per subunit (PubMed:11866529). In a number of structures (e.g. 4Y4O, 5FDV) a 4Fe-4S cluster is seen in place of the zinc cofactor (PubMed:25775268, PubMed:26792896).
Chain : E
UniProt : P27152 (RS5_THETH)
Reaction : -
Chain : F
UniProt : P23370 (RS6_THETH)
Reaction : -
Chain : G
UniProt : P17291 (RS7_THET8)
Reaction : -
Chain : H
UniProt : P24319 (RS8_THETH)
Reaction : -
Chain : J
UniProt : P80375 (RS10_THETH)
Reaction : -
Chain : L
UniProt : P17293 (RS12_THETH)
Reaction : -
Chain : N
UniProt : P24320 (RS14Z_THETH)
Reaction : -
Cofactor: Evidence: Note:
Zn(2+) ECO:0000255 | HAMAP-Rule:MF_01364
Binds 1 zinc ion per subunit.
Chain : O
UniProt : P80378 (RS15_THETH)
Reaction : -
Chain : P
UniProt : P80379 (RS16_THETH)
Reaction : -
Chain : Q
UniProt : P24321 (RS17_THETH)
Reaction : -
Chain : S
UniProt : P80381 (RS19_THETH)
Reaction : -
Chain : V
UniProt : P32193 (multiple entry names are found)
Reaction : -