Brand  (β version)

PDB ID: 145D

Hetero Atom Contents

  The number of atoms exceeds 100,000.
  So, it can not be displayed here.

Select unit:

Select chain:   Sequence  

Data format:   

Color scheme of protein:

Ligands
Code Name Style Show Link
Non-standard Residues
Code Name Show
MCY 5-methyl-2'-deoxycytidine
5CM 5-methyl-2'-deoxy-cytidine-5'-monophosphate
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 145D   PDBj   RCSB PDB   PDBe
Header : DNA
Title : Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG)
Release Data : 1994-01-15
Compound :
mol_id molecule chains
1 DNA (5'-D(*(MCY)P*GP*GP*GP*(5CM)P*G)-3') A
mol_id molecule chains
2 DNA (5'-D(*(MCY)P*GP*CP*CP*(5CM)P*G)-3') B,C
mol_id molecule chains
3 DNA (5'-D(*(5CM)P*DGP*DGP*DGP*(5CM)P*DG)-3') D
Source :
mol_id organism_scientific
1
synthetic: yes
mol_id organism_scientific
2
synthetic: yes
mol_id organism_scientific
3
synthetic: yes
Authors : Schroth, G.P., Kagawa, T.F., Shing Ho, P.
Keywords : Z-DNA, DOUBLE HELIX, MODIFIED, DNA
Exp. method : X-RAY DIFFRACTION ( 1.250 Å )
Citation :

Structure and thermodynamics of nonalternating C.G base pairs in Z-DNA: the 1.3-A crystal structure of the asymmetric hexanucleotide d(m5CGGGm5CG).d(m5CGCCm5CG).

Schroth, G.P.,Kagawa, T.F.,Ho, P.S.
(1993)  Biochemistry  32 : 13381 - 13392

PubMed: 8257675
DOI: 10.1021/bi00212a002

Molecular Structure of (m5dC-dG)3: The Role of the Methyl Group on 5-Methyl Cytosine in Stabilizing Z-DNA

Fujii, S.,Wang, A.H.-J.,Van Der Marel, G.  et al.
(1982)  Nucleic Acids Res.  10 : 7879 - 7892