Brand  (β version)

PDB ID: 109D

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Ligands
Code Name Style Show Link
IBB 5-(2-imidazolinyl)-2-[2-(4-hydroxyphenyl)-5-benzimidazolyl]benzimidazole PoSSuM
MG Magnesium ion PoSSuM
Non-standard Residues
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Glycosylation
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Structure summary

Code : 109D   PDBj   RCSB PDB   PDBe
Header : DNA
Title : VARIABILITY IN DNA MINOR GROOVE WIDTH RECOGNISED BY LIGAND BINDING: THE CRYSTAL STRUCTURE OF A BIS-BENZIMIDAZOLE COMPOUND BOUND TO THE DNA DUPLEX D(CGCGAATTCGCG)2
Release Data : 1995-05-08
Compound :
mol_id molecule chains
1 DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') A,B
Source :
mol_id organism_scientific
1
synthetic: yes
Authors : Czarny, A., Boykin, D.W., Wood, A.A., Nunn, C.M., Neidle, S., Zhao, M., Wilson, W.D.
Keywords : B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA
Exp. method : X-RAY DIFFRACTION ( 2.000 Å )
Citation :

Variability in DNA minor groove width recognised by ligand binding: the crystal structure of a bis-benzimidazole compound bound to the DNA duplex d(CGCGAATTCGCG)2.

Wood, A.A.,Nunn, C.M.,Czarny, A.  et al.
(1995)  Nucleic Acids Res.  23 : 3678 - 3684

PubMed: 7478996
DOI: 10.1093/nar/23.18.3678

Analysis of Van Der Waals and Electrostatic Contributions in the Interactions of Minor Groove Binding Benzimidazoles with DNA

Czarny, A.,Boykin, D.W.,Wood, A.A.  et al.
(1995)  J.Am.Chem.Soc.  117 : 4716 - 4717

Low Temperature Crystallographic Analyses of the Binding of Hoechst 33258 to the Double Helical DNA Dodecamer C-G-C-G-A-A-T-T-C-G-C-G

Quintana, J.R.,Lipanov, A.A.,Dickerson, R.E.
(1991)  Biochemistry  30 : 10294