Brand  (β version)

PDB ID: 6C57

Hetero Atom Contents

  The number of atoms exceeds 100,000.
  So, it can not be displayed here.

Select unit:

Color scheme of protein:

Code Name Style Show Link
FV9 {[(2-{3-[(4-fluorobenzene-1-carbonyl)amino]phenyl}thieno[2,3-D]pyrimidin-4-yl)amino]methylene}bis(phosphonic acid) PoSSuM

Select hetatm:   

Select hetatm:   

Select chain:  

Data format:   

Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 6C57   PDBj   RCSB PDB   PDBe
Header : TRANSFERASE/TRANSFERASE INHIBITOR
Title : Crystal structure of mutant human geranylgeranyl pyrophosphate synthase (Y246D) in complex with bisphosphonate inhibitor FV0109
Release Data : 2018-09-05
Compound :
mol_id molecule chains synonym
1 Geranylgeranyl pyrophosphate synthase A,B GGPPSase,(2E,6E)-farnesyl diphosphate synthase,Dimethylallyltranstransferase,Farnesyl diphosphate synthase,Farnesyltranstransferase,Geranylgeranyl diphosphate synthase,Geranyltranstransferase
ec: 2.5.1.-,2.5.1.1,2.5.1.29,2.5.1.10
mutation: Y246D
Source :
mol_id organism_scientific organism_common expression_system
1 Homo sapiens  (taxid:9606) Human Escherichia coli  (taxid:562)
gene: GGPS1
Authors : Park, J., Bin, X., Vincent, F., Tsantrizos, Y.S., Berghuis, A.M.
Keywords : ISOPRENOID PATHWAY, ISOPENTENYL TRANSFERASE, TRANSFERASE INHIBITOR, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR complex
Exp. method : X-RAY DIFFRACTION ( 3.50 Å )
Citation :

Unraveling the Prenylation-Cancer Paradox in Multiple Myeloma with Novel Geranylgeranyl Pyrophosphate Synthase (GGPPS) Inhibitors.

Lacbay, C.M.,Waller, D.D.,Park, J.  et al.
(2018)  J. Med. Chem.  61 : 6904 - 6917

PubMed: 30016091
DOI: 10.1021/acs.jmedchem.8b00886

Reaction

Chain : A, B
UniProt : O95749 (GGPPS_HUMAN)
Reaction: EC: Evidence:
Physiological Direction:
isopentenyl diphosphate + dimethylallyl diphosphate = (2E)- geranyl diphosphate + diphosphate 2.5.1.1 PubMed:16698791
-
isopentenyl diphosphate + (2E)-geranyl diphosphate = (2E,6E)- farnesyl diphosphate + diphosphate 2.5.1.10 PubMed:16698791
-
isopentenyl diphosphate + (2E,6E)-farnesyl diphosphate = (2E,6E,10E)-geranylgeranyl diphosphate + diphosphate 2.5.1.29 PubMed:16698791
-
Cofactor: Evidence: Note:
Mg(2+) ECO:0000305
Binds 3 Mg(2+) ions.