Het-PDB Navi2 (PDB: 6GXC)

The number of atoms exceeds 100,000.
So, it can not be displayed here.

Select unit:

Select hetatm:

information

centroid:

interaction residue:

Select chain: Sequence Hide other chain(s)

Data format:

Color scheme of protein:

Ligands
Code	Name	Link
FFK	[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl] [oxidanyl-[(2~{z},6~{z},10~{z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl] hydrogen phosphate	PoSSuM
MES	2-(N-morpholino)-ethanesulfonic acid	PoSSuM
MN	Manganese (II) ion	PoSSuM
NA	Sodium ion	PoSSuM
PEG	Di(hydroxyethyl)ether	PoSSuM

Non-standard Residues
Code	Name	Show
DAB	2,4-diaminobutyric acid
PPN	Para-nitrophenylalanine

Glycosylation
Code	Name	Emphasize

Modification
Code	Name	Show

Download interaction data: 6GXC

Code :

6GXC PDBj RCSB PDB PDBe

Header :

MEMBRANE PROTEIN

Title :

Bacterial oligosaccharyltransferase PglB in complex with an inhibitory peptide and a reactive lipid-linked oligosaccharide analog

Release Data :

2018-11-14

Compound :

mol_id	molecule	chains	synonym
1	Undecaprenyl-diphosphooligosaccharide--protein glycotransferase	A	Protein glycosylation B
	ec: 2.4.99.19

mol_id	molecule	chains
2	GLY-ASP-GLN-DAB-ALA-THR-PPN-GLY	B

Source :

mol_id	organism_scientific	expression_system
1	Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) (taxid:306263)	Escherichia coli BL21(DE3) (taxid:469008)
	strain: RM2100 / D67 / ATCC BAA-1060 gene: pglB, Cla_1253

mol_id	organism_scientific	expression_system
2	Campylobacter lari RM2100 (taxid:306263)	Escherichia coli BL21(DE3) (taxid:469008)

Authors :

Napiorkowska, M., Locher, K.P., Boilevin, J., Darbre, T., Reymond, J.-L.

Keywords :

Glycosyltransferase, Lipid-linked oligosaccharide, Ternary complex, MEMBRANE PROTEIN

Exp. method :

X-RAY DIFFRACTION ( 3.401 Å )

Citation :

Structure of bacterial oligosaccharyltransferase PglB bound to a reactive LLO and an inhibitory peptide.

Napiorkowska, M.,Boilevin, J.,Darbre, T. et al.
(2018) Sci Rep 8 : 16297 - 16297

Chain :

UniProt :

B9KDD4 (PGLB_CAMLR)

Reaction:	EC:	Evidence:
Reaction:	Physiological Direction:	Evidence:
tritrans,heptacis-undecaprenyl diphosphooligosaccharide + [protein]-L-asparagine = tritrans,heptacis-undecaprenyl diphosphate + a glycoprotein with the oligosaccharide chain attached by N-beta-D- glycosyl linkage to protein L-asparagine.	2.4.99.19	PubMed:21677752, PubMed:24149797
	-	PubMed:21677752, PubMed:24149797
Cofactor:	Evidence:	Note:
Mn(2+)	ECO:0000269 \| PubMed:21677752 ECO:0000269 \| PubMed:21677752 ECO:0000269 \| PubMed:29058712	-

PDB ID: 6GXC