Brand  (β version)

PDB ID: 6F9P

Hetero Atom Contents

  The number of atoms exceeds 100,000.
  So, it can not be displayed here.

Select unit:

Select hetatm:   

close
information
centroid:
interaction residue:

Select chain:   Sequence  

Data format:   

Color scheme of protein:

Ligands
Code Name Style Show Link
CL Chloride ion PoSSuM
RE Rhenium PoSSuM
SO4 Sulfate ion PoSSuM
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 6F9P   PDBj   RCSB PDB   PDBe
Header : OXIDOREDUCTASE
Title : Crystal structure of the Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO5 with Re(II)
Release Data : 2018-11-14
Compound :
mol_id molecule chains synonym
1 L-lysine 4-hydroxylase A,B,C,D Alpha-ketoglutarate-dependent dioxygenase,KDO5,L-lysine hydroxylase
ec: 1.14.11.-
Source :
mol_id organism_scientific expression_system
1 Flavobacterium sp. (strain CF136)  (taxid:1144313) Escherichia coli  (taxid:562)
strain: CF136
gene: PMI10_03368
Authors : Isabet, T., Stura, E., Legrand, P., Zaparucha, A., Bastard, K.
Keywords : Fe(II)/alpha-ketoglutarate, dioxygenases, enzyme, FeII alphaKG form, oxydoreductase, OXIDOREDUCTASE
Exp. method : X-RAY DIFFRACTION ( 2.40 Å )
Citation :

Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family.

Bastard, K.,Isabet, T.,Stura, E.A.  et al.
(2018)  Sci Rep  8 : 16587 - 16587

PubMed: 30410048
DOI: 10.1038/s41598-018-34795-9

Reaction

Chain : A, B, C, D
UniProt : J3BZS6 (LYS4O_FLASC)
Reaction: EC: Evidence:
Physiological Direction:
2-oxoglutarate + L-lysine + O2 = (4R)-4-hydroxy-L-lysine + CO2 + succinate - Ref.2
-