Brand  (β version)

  The number of atoms exceeds 100,000.
  So, it can not be displayed here.

Select unit:

Select hetatm:   

close
information
centroid:
interaction residue:

Select chain:   Sequence  

Data format:   

Color scheme of protein:

Ligands
Code Name Style Show Link
CZK (2~{S})-1-[3-(3-cyclopentyloxy-4-methoxy-phenyl)pyrazol-1-yl]-3-morpholin-4-yl-propan-2-ol
EDO 1,2-ethanediol
MG Magnesium ion
ZN Zinc ion
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
Modification
Code Name Show
Code : 6F8R   PDBj   RCSB PDB   PDBe
Header : HYDROLASE
Title : Crystal structure of the PDE4D catalytic domain in complex with GEBR-54
Release Data : 2018-05-16
Compound :
mol_id molecule chains synonym
1 cAMP-specific 3',5'-cyclic phosphodiesterase 4D A,B DPDE3,PDE43
ec: 3.1.4.53
Source :
mol_id organism_scientific organism_common expression_system
1 Homo sapiens  (taxid:9606) Human Escherichia coli BL21(DE3)  (taxid:469008)
gene: PDE4D, DPDE3
Authors : Prosdocimi, T., Donini, S., Parisini, E.
Keywords : PDE4, catalytic domain, inhibitor, GEBR, HYDROLASE
Exp. method : X-RAY DIFFRACTION ( 1.826 Å )
Citation :

Molecular Bases of PDE4D Inhibition by Memory-Enhancing GEBR Library Compounds.

Prosdocimi, T.,Mollica, L.,Donini, S.  et al.
(2018)  Biochemistry  57 : 2876 - 2888

PubMed: 29652483
DOI: 10.1021/acs.biochem.8b00288

Chain : A, B
UniProt : Q08499 (PDE4D_HUMAN)
Reaction: EC: Evidence:
Physiological Direction:
3',5'-cyclic AMP + H2O = AMP + H(+) 3.1.4.53 PubMed:9371713
left-to-right