Het-PDB Navi2 (PDB: 6CWB)

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Ligands
Code	Name	Link
FJJ	(5r,6s,7s)-5,6-dihydroxy-7-(octanoylamino)-N-[(1e)-4-phenylbutylidene]-8-{[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2h-pyran-2-yl]oxy}octanamide (non-preferred name)	PoSSuM
NA	Sodium ion	PoSSuM
PLM	Palmitic acid	PoSSuM

Non-standard Residues
Code	Name	Show

Glycosylation
Code	Name	Emphasize
FUC	Alpha-L-fucopyranose
NAG	2-acetamido-2-deoxy-beta-D-glucopyranose

Modification
Code	Name	Show

Download interaction data: 6CWB

Code :

6CWB PDBj RCSB PDB PDBe

Header :

IMMUNE SYSTEM

Title :

Structure of alpha-GSA[8,4P] bound by CD1d and in complex with the Va14Vb8.2 TCR

Release Data :

2019-04-03

Compound :

mol_id	molecule	chains	synonym
1	Antigen-presenting glycoprotein CD1d1	A	MCG3074,isoform CRA_a

mol_id	molecule	chains
2	Beta-2-microglobulin	B

mol_id	molecule	chains
3	Chimeric T cell antigen receptor alpha chain Va14,Va24,Ja18	C

mol_id	molecule	chains
4	Chimeric T cell antigen receptor beta chain Vb8.2, vb11	D

Source :

mol_id	organism_scientific	organism_common	expression_system
1	Mus musculus (taxid:10090)	Mouse	Spodoptera frugiperda (taxid:7108)
	gene: Cd1d1, mCG_3074 expression_system_strain: SF9 expression_system_plasmid: pBACpHp10

mol_id	organism_scientific	organism_common	expression_system
2	Mus musculus (taxid:10090)	Mouse	Spodoptera frugiperda (taxid:7108)
	gene: B2m expression_system_strain: SF9 expression_system_plasmid: pBABpHp10

mol_id	organism_scientific	organism_common	expression_system
3	Mus musculus (taxid:10090)	Mouse	Escherichia coli 'BL21-Gold(DE3)pLysS AG' (taxid:866768)
	expression_system_plasmid: pET22b+

mol_id	organism_scientific	organism_common	expression_system
4	Mus musculus (taxid:10090)	Mouse	Escherichia coli 'BL21-Gold(DE3)pLysS AG' (taxid:866768)
	expression_system_plasmid: pET22b+

Authors :

Wang, J., Zajonc, D.

Keywords :

immune system, antigen-presentation, TCR, MHC-fold

Exp. method :

X-RAY DIFFRACTION ( 2.8500 Å )

Citation :

A molecular switch in mouse CD1d modulates natural killer T cell activation by alpha-galactosylsphingamides.

Wang, J.,Guillaume, J.,Janssens, J. et al.
(2019) J.Biol.Chem. 294 : 14345 - 14356

PDB ID: 6CWB