Brand  (β version)

PDB ID: 6A9J

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Ligands
Code Name Style Show Link
PEE 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine PoSSuM
Non-standard Residues
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Glycosylation
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Modification
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Structure summary

Code : 6A9J   PDBj   RCSB PDB   PDBe
Header : LIPID TRANSPORT
Title : Crystal structure of the PE-bound N-terminal domain of Atg2
Release Data : 2019-03-20
Compound :
mol_id molecule chains synonym
1 Endolysin,Autophagy-related protein 2 A,B Lysis protein,Lysozyme,Muramidase,Meiotically up-regulated gene 36 protein
ec: 3.2.1.17
mutation: D20N, C54T, C97A
other_details: The deleted regions in our structure are due to electron density disorder.
Source :
mol_id organism_scientific organism_common expression_system
1 Schizosaccharomyces pombe  (taxid:284812) Fission yeast Escherichia coli  (taxid:562)
strain: 972 / ATCC 24843
gene: atg2, mug36, SPBC31E1.01c, SPBC660.18c
Authors : Osawa, T., Noda, N.N.
Keywords : LIPID TRANSPORT
Exp. method : X-RAY DIFFRACTION ( 2.7 Å )
Citation :

Atg2 mediates direct lipid transfer between membranes for autophagosome formation.

Osawa, T.,Kotani, T.,Kawaoka, T.  et al.
(2019)  Nat. Struct. Mol. Biol.  26 : 281 - 288

PubMed: 30911189
DOI: 10.1038/s41594-019-0203-4

Reaction

Chain : A, B
UniProt : A0A097J809 (A0A097J809_BPT4)
Reaction: EC: Evidence:
Physiological Direction:
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins. 3.2.1.17 ARBA:ARBA00000632, HAMAP-Rule:MF_04110, RuleBase:RU003788
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Chain : A, B
UniProt : O94649 (ATG2_SCHPO)
Reaction: EC: Evidence:
Physiological Direction:
a 1,2-diacyl-sn-glycero-3-phosphocholine(in) = a 1,2-diacyl- sn-glycero-3-phosphocholine(out) - PubMed:30911189
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a 1,2-diacyl-sn-glycero-3-phospho-L-serine(in) = a 1,2-diacyl- sn-glycero-3-phospho-L-serine(out) - PubMed:30911189
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a 1,2-diacyl-sn-glycero-3-phosphoethanolamine(in) = a 1,2- diacyl-sn-glycero-3-phosphoethanolamine(out) - PubMed:30911189
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