Brand  (β version)

PDB ID: 6JY4

Hetero Atom Contents

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Ligands
Code Name Style Show Link
CDL Cardiolipin PoSSuM
CHD Cholic acid PoSSuM
CQX (2s,3s,4s,5s,6r)-2-(2-decoxyethoxy)-6-(hydroxymethyl)oxane-3,4,5-triol PoSSuM
CU Copper (II) ion PoSSuM
CUA Dinuclear copper ion PoSSuM
HEA Heme-a PoSSuM
MG Magnesium ion PoSSuM
NA Sodium ion PoSSuM
PEK (1s)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-icosa-5,8,11,14-tetraenoate PoSSuM
PGV (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate PoSSuM
ZN Zinc ion PoSSuM
Non-standard Residues
Code Name Show
FME N-formylmethionine
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 6JY4   PDBj   RCSB PDB   PDBe
Header : OXIDOREDUCTASE
Title : Monomeric Form of Bovine Heart Cytochrome C Oxidase in the Fully Reduced State
Release Data : 2019-09-18
Compound :
mol_id molecule chains synonym
1 Cytochrome c oxidase subunit 1 A Cytochrome c oxidase polypeptide I
ec: 1.9.3.1
mol_id molecule chains synonym
2 Cytochrome c oxidase subunit 2 B Cytochrome c oxidase polypeptide II
mol_id molecule chains synonym
3 Cytochrome c oxidase subunit 3 C Cytochrome c oxidase polypeptide III
mol_id molecule chains synonym
4 Cytochrome c oxidase subunit 4 isoform 1 D Cytochrome c oxidase polypeptide IV
mol_id molecule chains synonym
5 Cytochrome c oxidase subunit 5A E Cytochrome c oxidase polypeptide Va
mol_id molecule chains synonym
6 Cytochrome c oxidase subunit 5B F Cytochrome c oxidase polypeptide VIa
mol_id molecule chains synonym
7 Cytochrome c oxidase subunit 6A2, mitochondrial G Cytochrome c oxidase polypeptide VIa-heart,COXVIAH,Cytochrome c oxidase polypeptide VIb
mol_id molecule chains synonym
8 Cytochrome c oxidase subunit 6B1 H Cytochrome c oxidase polypeptide VII
mol_id molecule chains synonym
9 Cytochrome c oxidase subunit 6C I Cytochrome c oxidase polypeptide VIc,Cytochrome c oxidase subunit STA
mol_id molecule chains synonym
10 Cytochrome c oxidase subunit 7A1 J Cytochrome c oxidase subunit VIIIc,VIIIC
mol_id molecule chains synonym
11 Cytochrome c oxidase subunit 7B K Cytochrome c oxidase polypeptide VIIb
mol_id molecule chains synonym
12 Cytochrome c oxidase subunit 7C, mitochondrial L Cytochrome c oxidase polypeptide VIIIA
mol_id molecule chains synonym
13 Cytochrome c oxidase subunit 8B M Cytochrome c oxidase polypeptide VIII-heart
Source :
mol_id organism_scientific organism_common
1 Bos taurus  (taxid:9913) Bovine
mol_id organism_scientific organism_common
2 Bos taurus  (taxid:9913) Bovine
mol_id organism_scientific organism_common
3 Bos taurus  (taxid:9913) Bovine
mol_id organism_scientific organism_common
4 Bos taurus  (taxid:9913) Bovine
mol_id organism_scientific organism_common
5 Bos taurus  (taxid:9913) Bovine
mol_id organism_scientific organism_common
6 Bos taurus  (taxid:9913) Bovine
mol_id organism_scientific organism_common
7 Bos taurus  (taxid:9913) Bovine
mol_id organism_scientific organism_common
8 Bos taurus  (taxid:9913) Bovine
mol_id organism_scientific organism_common
9 Bos taurus  (taxid:9913) Bovine
mol_id organism_scientific organism_common
10 Bos taurus  (taxid:9913) Bovine
mol_id organism_scientific organism_common
11 Bos taurus  (taxid:9913) Bovine
mol_id organism_scientific organism_common
12 Bos taurus  (taxid:9913) Bovine
mol_id organism_scientific organism_common
13 Bos taurus  (taxid:9913) Bovine
Authors : Shinzawa-Itoh, K., Muramoto, K.
Keywords : Monomer, Fully Reduced, OXIDOREDUCTASE
Exp. method : X-RAY DIFFRACTION ( 1.95 Å )
Citation :

Monomeric structure of an active form of bovine cytochromecoxidase.

Shinzawa-Itoh, K.,Sugimura, T.,Misaki, T.  et al.
(2019)  Proc.Natl.Acad.Sci.USA  116 : 19945 - 19951

PubMed: 31533957
DOI: 10.1073/pnas.1907183116

Reaction

Chain : A
UniProt : P00396 (COX1_BOVIN)
Reaction: EC: Evidence:
Physiological Direction:
4 Fe(II)-[cytochrome c] + 8 H(+)(in) + O2 = 4 Fe(III)- [cytochrome c] + 4 H(+)(out) + 2 H2O 7.1.1.9 UniProtKB:P00401
left-to-right
Chain : B
UniProt : P68530 (COX2_BOVIN)
Reaction: EC: Evidence:
Physiological Direction:
4 Fe(II)-[cytochrome c] + 8 H(+)(in) + O2 = 4 Fe(III)- [cytochrome c] + 4 H(+)(out) + 2 H2O 7.1.1.9 UniProtKB:P00410
left-to-right
Chain : C
UniProt : P00415 (COX3_BOVIN)
Reaction: EC: Evidence:
Physiological Direction:
4 Fe(II)-[cytochrome c] + 8 H(+)(in) + O2 = 4 Fe(III)- [cytochrome c] + 4 H(+)(out) + 2 H2O 7.1.1.9 UniProtKB:P00420
left-to-right
Chain : D
UniProt : P00423 (COX41_BOVIN)
Reaction : -
Chain : E
UniProt : P00426 (COX5A_BOVIN)
Reaction : -
Chain : F
UniProt : P00428 (COX5B_BOVIN)
Reaction : -
Chain : G
UniProt : P07471 (CX6A2_BOVIN)
Reaction : -
Chain : H
UniProt : P00429 (CX6B1_BOVIN)
Reaction : -
Chain : I
UniProt : P04038 (COX6C_BOVIN)
Reaction : -
Chain : J
UniProt : P07470 (CX7A1_BOVIN)
Reaction : -
Chain : K
UniProt : P13183 (COX7B_BOVIN)
Reaction : -
Chain : L
UniProt : P00430 (COX7C_BOVIN)
Reaction : -
Chain : M
UniProt : P10175 (COX8B_BOVIN)
Reaction : -