Het-PDB Navi2 (PDB: 6JO6)

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Ligands
Code	Name	Link
BCR	Beta-carotene	PoSSuM
CHL	Chlorophyll B	PoSSuM
CL0	Chlorophyll a isomer	PoSSuM
CLA	Chlorophyll a	PoSSuM
LHG	1,2-dipalmitoyl-phosphatidyl-glycerole	PoSSuM
LMG	1,2-distearoyl-monogalactosyl-diglyceride	PoSSuM
LUT	(3r,3'R,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol	PoSSuM
PQN	Phylloquinone	PoSSuM
SF4	Iron/sulfur cluster	PoSSuM
DGD	Digalactosyl diacyl glycerol (dgdg)	PoSSuM

Non-standard Residues
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Glycosylation
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Download interaction data: 6JO6

Code :

6JO6 PDBj RCSB PDB PDBe

Header :

PHOTOSYNTHESIS

Title :

Structure of the green algal photosystem I supercomplex with light-harvesting complex I

Release Data :

2019-06-19

Compound :

mol_id	molecule	chains	synonym
1	Photosystem I P700 chlorophyll a apoprotein A1	A	PSI-A,PsaA
	ec: 1.97.1.12

mol_id	molecule	chains	synonym
2	Photosystem I P700 chlorophyll a apoprotein A2	B	PSI-B,PsaB
	ec: 1.97.1.12

mol_id	molecule	chains	synonym
3	Photosystem I iron-sulfur center	C	PsaC
	ec: 1.97.1.12

mol_id	molecule	chains	synonym
4	Photosystem I reaction center subunit II, chloroplastic	D	Photosystem I peripheral protein D, Photosystem I 20 kDa subunit,PSI-D

mol_id	molecule	chains	synonym
5	Photosystem I reaction center subunit IV, chloroplastic	E	Photosystem I peripheral protein E, PSI-E,P30 protein,Photosystem I 8.1 kDa protein

mol_id	molecule	chains	synonym
6	Photosystem I reaction center subunit F, Photosystem I reaction center subunit III, chloroplastic	F	Light-harvesting complex I 17 kDa protein,P21 protein,PSI-F

mol_id	molecule	chains	synonym
7	Photosystem I reaction center subunit V, chloroplastic	G	Photosystem I reaction center subunit G, Light-harvesting complex I 10 kDa protein,P35 protein,PSI-G

mol_id	molecule	chains	synonym
8	Photosystem I reaction center subunit VIII	I	Photosystem I reaction center subunit I

mol_id	molecule	chains	synonym
9	Photosystem I reaction center subunit IX	J	Photosystem I reaction center subunit J, PSI-J

mol_id	molecule	chains	synonym
10	Photosystem I reaction center subunit psaK, chloroplastic	K	Photosystem I reaction center subunit K, Light-harvesting complex I 8.4 kDa protein,P37 protein,PSI-K,Photosystem I subunit X

mol_id	molecule	chains	synonym
11	Photosystem I reaction center subunit XI	L	Photosystem I reaction center protein L

mol_id	molecule	chains	synonym
12	Chlorophyll a-b binding protein, chloroplastic	1,Z	Chlorophyll a-b binding protein 1

mol_id	molecule	chains	synonym
13	Chlorophyll a-b binding protein, chloroplastic	3	Chlorophyll a-b binding protein 3

mol_id	molecule	chains	synonym
14	Chlorophyll a-b binding protein, chloroplastic	7	Chlorophyll a-b binding protein 7

mol_id	molecule	chains	synonym
15	Chlorophyll a-b binding protein, chloroplastic	8	Chlorophyll a-b binding protein 8

mol_id	molecule	chains	synonym
16	Chlorophyll a-b binding protein, chloroplastic	4	Chlorophyll a-b binding protein 4

mol_id	molecule	chains	synonym
17	Chlorophyll a-b binding protein, chloroplastic	5	Chlorophyll a-b binding protein 5

mol_id	molecule	chains	synonym
18	Chlorophyll a-b binding protein, chloroplastic	6	Chlorophyll a-b binding protein 6

Source :

mol_id	organism_scientific	organism_common	expression_system
1	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: psaA, ps1a1

mol_id	organism_scientific	organism_common	expression_system
2	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: psaB, ps1a2

mol_id	organism_scientific	organism_common	expression_system
3	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: psaC

mol_id	organism_scientific	organism_common	expression_system
4	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: psaD

mol_id	organism_scientific	organism_common	expression_system
5	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: PSAE

mol_id	organism_scientific	organism_common	expression_system
6	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: PSAF

mol_id	organism_scientific	organism_common	expression_system
7	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: PSAG

mol_id	organism_scientific	organism_common	expression_system
8	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: PSAI

mol_id	organism_scientific	organism_common	expression_system
9	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: psaJ

mol_id	organism_scientific	organism_common	expression_system
10	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: PSAK

mol_id	organism_scientific	organism_common	expression_system
11	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: PSAL, CHLRE_12g486300v5, CHLREDRAFT_205935

mol_id	organism_scientific	organism_common	expression_system
12	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: cabI-1

mol_id	organism_scientific	organism_common	expression_system
13	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: LHCA3, CHLREDRAFT_153678

mol_id	organism_scientific	organism_common	expression_system
14	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: Lhca, CHLRE_16g687900v5

mol_id	organism_scientific	organism_common	expression_system
15	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: LhcI-4, LHCA8, CHLRE_06g272650v5, CHLREDRAFT_187025

mol_id	organism_scientific	organism_common	expression_system
16	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: LhcI-1, CHLRE_10g452050v5

mol_id	organism_scientific	organism_common	expression_system
17	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: LhcI-3, LHCA5, CHLRE_10g425900v5, CHLREDRAFT_186299

mol_id	organism_scientific	organism_common	expression_system
18	Chlamydomonas reinhardtii (taxid:3055)	Chlamydomonas smithii	Chlamydomonas reinhardtii (taxid:3055)
	gene: LhcI-5, LHCA6, CHLRE_06g278213v5, CHLREDRAFT_192961

Authors :

Suga, M., Miyazaki, N., Takahashi, Y.

Keywords :

photosystem membrane protein, PHOTOSYNTHESIS

Exp. method :

ELECTRON MICROSCOPY ( 2.9 Å )

Citation :

Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I.

Suga, M.,Ozawa, S.I.,Yoshida-Motomura, K. et al.
(2019) Nat.Plants 5 : 626 - 636

PubMed: 31182847
DOI: 10.1038/s41477-019-0438-4

Chain :

UniProt :

P12154 (PSAA_CHLRE)

Reaction:	EC:	Evidence:
Reaction:	Physiological Direction:	Evidence:
hnu + oxidized [2Fe-2S]-[ferredoxin] + reduced [plastocyanin] = oxidized [plastocyanin] + reduced [2Fe-2S]-[ferredoxin]	1.97.1.12	-
	-	-

Chain :

UniProt :

P09144 (PSAB_CHLRE)

Reaction:	EC:	Evidence:
Reaction:	Physiological Direction:	Evidence:
hnu + oxidized [2Fe-2S]-[ferredoxin] + reduced [plastocyanin] = oxidized [plastocyanin] + reduced [2Fe-2S]-[ferredoxin]	1.97.1.12	-
	-	-

Chain :

UniProt :

Q00914 (PSAC_CHLRE)

Reaction:	EC:	Evidence:
Reaction:	Physiological Direction:	Evidence:
hnu + oxidized [2Fe-2S]-[ferredoxin] + reduced [plastocyanin] = oxidized [plastocyanin] + reduced [2Fe-2S]-[ferredoxin]	1.97.1.12	HAMAP- Rule:MF_01303
	-	HAMAP- Rule:MF_01303

Chain :	D
UniProt :	Q39615 (PSAD_CHLRE)
Reaction :	-

Chain :	E
UniProt :	P12352 (PSAE_CHLRE)
Reaction :	-

Chain :	F
UniProt :	P12356 (PSAF_CHLRE)
Reaction :	-

Chain :	G
UniProt :	P14224 (PSAG_CHLRE)
Reaction :	-

Chain :	I
UniProt :	A8IFG7 (A8IFG7_CHLRE)
Reaction :	-

Chain :	J
UniProt :	P59777 (PSAJ_CHLRE)
Reaction :	-

Chain :	K
UniProt :	P14225 (PSAK_CHLRE)
Reaction :	-

Chain :	L
UniProt :	A8IL32 (A8IL32_CHLRE)
Reaction :	-

Chain :	1, Z
UniProt :	Q7DM26 (Q7DM26_CHLRE)
Reaction :	-

Chain :	3
UniProt :	A8JF10
Reaction :	-

Chain :	7
UniProt :	Q84Y02 (Q84Y02_CHLRE)
Reaction :	-

Chain :	8
UniProt :	Q75VY7 (Q75VY7_CHLRE)
Reaction :	-

Chain :	4
UniProt :	Q75VZ0 (Q75VZ0_CHLRE)
Reaction :	-

Chain :	5
UniProt :	Q75VY8 (Q75VY8_CHLRE)
Reaction :	-

Chain :	6
UniProt :	Q75VY6 (Q75VY6_CHLRE)
Reaction :	-

PDB ID: 6JO6

Hetero Atom Contents

Structure summary

Reaction