Het-PDB Navi2 (PDB: 6I4N)

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Ligands
Code	Name		Style	Show	Link
K4Z	3-[3-[[4-[[4-[[4-[[4-[[(2~{R})-2-azaniumyl-4-[[1-methyl-4-[[1-methyl-4-[[1-methyl-4-[(1-methylimidazol-2-yl)carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]butanoyl]amino]-1-methyl-imidazol-2-yl]carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]propanoylamino]propyl-dimethyl-azanium				PoSSuM

Non-standard Residues
Code	Name	Show
DP	[(2~{R},3~{S},5~{R})-5-(2-azanyl-4-oxidanylidene-imidazo[1,2-a][1,3,5]triazin-8-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
DZ	[(2~{R},3~{S},5~{R})-5-(6-azanyl-5-nitro-2-oxidanylidene-1~{H}-pyridin-3-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Glycosylation
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Modification
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Download interaction data: 6I4N

Code :

6I4N PDBj RCSB PDB PDBe

Header :

DNA

Title :

Dodecamer DNA containing the synthetic base pair P-Z in complex with a pyrrole-imidazole polyamide

Release Data :

2019-06-12

Compound :

mol_id	molecule	chains
1	DNA (5'-D(CPGPAPTP(DP)PTPAP(DZ)PAPTPCPG)-3')	A,B

Source :

mol_id	organism_scientific
1	Synthetic construct (taxid:32630)
	synthetic: yes

Authors :

Padroni, G., Parkison, J., Burley, G.A.

Keywords :

DNA, synthetic base pair, Z, P, pyrrole-imidazole polyamide

Exp. method :

SOLUTION NMR

Citation :

Sequence-Selective Minor Groove Recognition of a DNA Duplex Containing Synthetic Genetic Components.

Padroni, G.,Withers, J.M.,Taladriz-Sender, A. et al.
(2019) J.Am.Chem.Soc. 141 : 9555 - 9563

PDB ID: 6I4N