Brand  (β version)

color scheme of protein:

hetatm:

x
information
centroid:
interaction residue:

chain: Hide other chain(s)

Ligands
Code Name Link
K4Z 3-[3-[[4-[[4-[[4-[[4-[[(2~{R})-2-azaniumyl-4-[[1-methyl-4-[[1-methyl-4-[[1-methyl-4-[(1-methylimidazol-2-yl)carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]butanoyl]amino]-1-methyl-imidazol-2-yl]carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]propanoylamino]propyl-dimethyl-azanium
Modified Residues
Code Name Link
DP [(2~{R},3~{S},5~{R})-5-(2-azanyl-4-oxidanylidene-imidazo[1,2-a][1,3,5]triazin-8-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
DZ [(2~{R},3~{S},5~{R})-5-(6-azanyl-5-nitro-2-oxidanylidene-1~{H}-pyridin-3-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
Code : 6I4N
Header : DNA
Title : Dodecamer DNA containing the synthetic base pair P-Z in complex with a pyrrole-imidazole polyamide
Release Data : 2019-06-12
Compound :
mol_id molecule chains
1 DNA (5'-D(*CP*GP*AP*TP*(DP)P*TP*AP*(DZ)P*AP*TP*CP*G)-3') A,B
Source :
mol_id organism_scientific
1 Synthetic construct  (taxid:32630)
synthetic: yes
Authors : Padroni, G., Parkison, J., Burley, G.A.
Keywords : DNA, synthetic base pair, Z, P, pyrrole-imidazole polyamide
Exp. method : SOLUTION NMR
Citation :

Sequence-Selective Minor Groove Recognition of a DNA Duplex Containing Synthetic Genetic Components.

Padroni, G.,Withers, J.M.,Taladriz-Sender, A.  et al.
(2019)  J.Am.Chem.Soc.  141 : 9555 - 9563

PubMed: 31117639
DOI: 10.1021/jacs.8b12444