Brand  (β version)

PDB ID: 6GOK

Hetero Atom Contents

  The number of atoms exceeds 100,000.
  So, it can not be displayed here.

Select unit:

Select hetatm:   

close
information
centroid:
interaction residue:

Select chain:   Sequence  

Data format:   

Color scheme of protein:

Ligands
Code Name Style Show Link
PD Palladium ion PoSSuM
F6Q N,N-pyridylbenzimidazole derivative-pd complex PoSSuM
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 6GOK   PDBj   RCSB PDB   PDBe
Header : HYDROLASE
Title : X-ray structure of the adduct formed upon reaction of bovine pancreatic ribonuclease with a Pd(II) complex bearing N,N-pyridylbenzimidazole derivative with an alkylated sulphonate side chain
Release Data : 2018-07-25
Compound :
mol_id molecule chains synonym
1 Ribonuclease pancreatic A,B RNase 1,RNase A
ec: 3.1.27.5
Source :
mol_id organism_scientific organism_common
1 Bos taurus  (taxid:9913) Bovine
Authors : Merlino, A., Ferraro, G.
Keywords : protein-metallodrug interaction, palladium-based drug, N-pyridylbenzimidazole bidentate ligands, stacking, non covalent bond, HYDROLASE
Exp. method : X-RAY DIFFRACTION ( 2.65 Å )
Citation :

Exploring the interactions between model proteins and Pd(ii) or Pt(ii) compounds bearing charged N,N-pyridylbenzimidazole bidentate ligands by X-ray crystallography.

Ferraro, G.,Mansour, A.M.,Merlino, A.
(2018)  Dalton Trans  47 : 10130 - 10138

PubMed: 30004541
DOI: 10.1039/c8dt01663a

Reaction

Chain : A, B
UniProt : P61823 (RNAS1_BOVIN)
Reaction: EC: Evidence:
Physiological Direction:
an [RNA] containing cytidine + H2O = an [RNA]-3'-cytidine-3'- phosphate + a 5'-hydroxy-ribonucleotide-3'-[RNA]. 4.6.1.18 -
-
an [RNA] containing uridine + H2O = an [RNA]-3'-uridine-3'- phosphate + a 5'-hydroxy-ribonucleotide-3'-[RNA]. 4.6.1.18 -
-