Brand  (β version)

PDB ID: 6GOB

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Ligands
Code Name Style Show Link
CL Chloride ion PoSSuM
F6Q N,N-pyridylbenzimidazole derivative-pd complex PoSSuM
NO3 Nitrate ion PoSSuM
PD Palladium ion PoSSuM
SO4 Sulfate ion PoSSuM
Non-standard Residues
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Glycosylation
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Structure summary

Code : 6GOB   PDBj   RCSB PDB   PDBe
Header : HYDROLASE
Title : X-ray structure of the adduct formed upon reaction of lysozyme with a Pd(II) complex bearing N,N-pyridylbenzimidazole derivative with an alkylated sulphonate side chain
Release Data : 2018-07-25
Compound :
mol_id molecule chains synonym
1 Lysozyme C A 1,4-beta-N-acetylmuramidase C,Allergen Gal d IV
ec: 3.2.1.17
Source :
mol_id organism_scientific organism_common
1 Gallus gallus  (taxid:9031) Chicken
Authors : Merlino, A., Ferraro, G.
Keywords : protein-metallodrug interaction, palladium-based drug, N-pyridylbenzimidazole bidentate ligands, stacking, non covalent bond, HYDROLASE
Exp. method : X-RAY DIFFRACTION ( 1.96 Å )
Citation :

Exploring the interactions between model proteins and Pd(ii) or Pt(ii) compounds bearing charged N,N-pyridylbenzimidazole bidentate ligands by X-ray crystallography.

Ferraro, G.,Mansour, A.M.,Merlino, A.
(2018)  Dalton Trans  47 : 10130 - 10138

PubMed: 30004541
DOI: 10.1039/c8dt01663a

Reaction

Chain : A
UniProt : P00698 (LYSC_CHICK)
Reaction: EC: Evidence:
Physiological Direction:
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins. 3.2.1.17 -
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