Brand  (β version)

PDB ID: 6DAQ

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Ligands
Code Name Style Show Link
Non-standard Residues
Code Name Show
9KP (E)-N~6~-[(2e)-1-carboxy-3-(2-carboxyphenyl)prop-2-en-1-ylidene]-L-lysine
KPI (2s)-2-amino-6-[(1-hydroxy-1-oxo-propan-2-ylidene)amino]hexanoic acid
Glycosylation
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Modification
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Structure summary

Code : 6DAQ   PDBj   RCSB PDB   PDBe
Header : LYASE
Title : PhdJ bound to substrate intermediate
Release Data : 2019-04-10
Compound :
mol_id molecule chains
1 PhdJ A,C,D
mol_id molecule chains
2 PhdJ B
Source :
mol_id organism_scientific expression_system
1 Mycobacterium vanbaalenii  (taxid:110539) Escherichia coli  (taxid:562)
gene: phdJ
expression_system_strain: ArcticExpress
mol_id organism_scientific expression_system
2 Mycobacterium vanbaalenii  (taxid:110539) Escherichia coli  (taxid:562)
gene: phdJ
expression_system_strain: ArcticExpress
Authors : Medellin, B.P., LeVieux, J.A., Zhang, Y.J., Whitman, C.P.
Keywords : aldolase, LYASE
Exp. method : X-RAY DIFFRACTION ( 2.00 Å )
Citation :

Structural Characterization of the Hydratase-Aldolases, NahE and PhdJ: Implications for the Specificity, Catalysis, and N-Acetylneuraminate Lyase Subgroup of the Aldolase Superfamily.

LeVieux, J.A.,Medellin, B.,Johnson Jr., W.H.  et al.
(2018)  Biochemistry  57 : 3524 - 3536

PubMed: 29856600
DOI: 10.1021/acs.biochem.8b00532

Reaction

Chain : B
UniProt : Q6H2K0 (Q6H2K0_MYCVN)
Reaction : -