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Ligands
Code Name Style Show Link
DOD Deuterated water
MG Magnesium ion
Non-standard Residues
Code Name Show
CSL (D)-2'-methylselenyl-2'-deoxycytidine-5'-phosphate
Glycosylation
Code Name Emphasize
Modification
Code Name Show
Code : 6D54   PDBj   RCSB PDB   PDBe
Header : DNA
Title : Low Temperature joint X-ray/neutron structure of DNA oligonucleotide D(GTGGCCAC)2 with 2'-SeCH3 modification on Cyt5
Release Data : 2018-10-17
Compound :
mol_id molecule chains
1 DNA (5'-D(*GP*TP*GP*GP*(CSL)P*CP*AP*C)-3') A
Source :
mol_id organism_scientific
1 Synthetic construct  (taxid:32630)
synthetic: yes
Authors : Kovalevsky, A., Huang, Z., Vandavasi, V.G.
Keywords : DNA, oligonucleotide, selenium modification
Exp. method : X-RAY DIFFRACTION ( 1.65 Å )
Citation :

Temperature-Induced Replacement of Phosphate Proton with Metal Ion Captured in Neutron Structures of A-DNA.

Vandavasi, V.G.,Blakeley, M.P.,Keen, D.A.  et al.
(2018)  Structure  26 : 1645

PubMed: 30244969
DOI: 10.1016/j.str.2018.08.001

Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules.

Adams, P.D.,Mustyakimov, M.,Afonine, P.V.  et al.
(2009)  Acta Crystallogr. D Biol. Crystallogr.  65 : 567 - 573

PubMed: 19465771
DOI: 10.1107/S0907444909011548