Het-PDB Navi2 (PDB: 6D4L)

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Ligands
Code	Name		Style	Show	Link
DOD	Deuterated water				PoSSuM
MG	Magnesium ion				PoSSuM

Non-standard Residues
Code	Name	Show
CSL	(D)-2'-methylselenyl-2'-deoxycytidine-5'-phosphate

Glycosylation
Code	Name	Emphasize

Modification
Code	Name	Show

Download interaction data: 6D4L

Code :

6D4L PDBj RCSB PDB PDBe

Header :

DNA

Title :

Joint X-ray/neutron structure of DNA oligonucleotide D(GTGGCCAC)2 with 2'-SeCH3 modification on Cyt5

Release Data :

2018-10-17

Compound :

mol_id	molecule	chains
1	DNA (5'-D(GPTPGPGP(CSL)PCPAPC)-3')	A

Source :

mol_id	organism_scientific
1	Synthetic construct (taxid:32630)
	synthetic: yes

Authors :

Kovalevsky, A., Huang, Z., Vandavasi, V.G.

Keywords :

DNA oligonucleotide selenium modification, DNA

Exp. method :

X-RAY DIFFRACTION ( 1.56 Å )

Citation :

Temperature-Induced Replacement of Phosphate Proton with Metal Ion Captured in Neutron Structures of A-DNA.

Vandavasi, V.G.,Blakeley, M.P.,Keen, D.A. et al.
(2018) Structure 26 : 1645

Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules.

Adams, P.D.,Mustyakimov, M.,Afonine, P.V. et al.
(2009) Acta Crystallogr. D Biol. Crystallogr. 65 : 567 - 573

PDB ID: 6D4L