Het-PDB Navi2 (PDB: 6C5M)

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Ligands
Code	Name		Style	Show	Link
J81	(5r,6s,7s)-5,6-dihydroxy-N-nonyl-7-(octanoylamino)-8-{[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2h-pyran-2-yl]oxy}octanamide (non-preferred name)				PoSSuM
PLM	Palmitic acid				PoSSuM

Non-standard Residues
Code	Name	Show

Glycosylation
Code	Name	Emphasize
BMA	Beta-D-mannopyranose
FUC	Alpha-L-fucopyranose
MAN	Alpha-D-mannopyranose
NAG	2-acetamido-2-deoxy-beta-D-glucopyranose

Modification
Code	Name	Show

Download interaction data: 6C5M

Code :

6C5M PDBj RCSB PDB PDBe

Header :

IMMUNE SYSTEM

Title :

Structure of glycolipid aGSA[8,9] in complex with mouse CD1d

Release Data :

2019-01-30

Compound :

mol_id	molecule	chains	synonym
1	Antigen-presenting glycoprotein CD1d1	A	MCG3074,isoform CRA_a
	other_details: full ecto-domain

mol_id	molecule	chains
2	Beta-2-microglobulin	B

Source :

mol_id	organism_scientific	organism_common	expression_system
1	Mus musculus (taxid:10090)	Mouse	Spodoptera frugiperda (taxid:7108)
	gene: Cd1d1, mCG_3074 expression_system_common: Fall armyworm expression_system_cell_line: SF9 expression_system_vector_type: baculovirus transfer vector expression_system_plasmid: pBACpHp10

mol_id	organism_scientific	organism_common	expression_system
2	Mus musculus (taxid:10090)	Mouse	Spodoptera frugiperda (taxid:7108)
	gene: B2m expression_system_common: Fall armyworm expression_system_cell_line: SF9 expression_system_vector_type: baculovirus transfer vector expression_system_plasmid: pBACpHp10

Authors :

Zajonc, D.M., Wang, J.

Keywords :

Glycolipid-antigen presentation, MHC-fold, Ig-fold, IMMUNE SYSTEM

Exp. method :

X-RAY DIFFRACTION ( 2.4500 Å )

Citation :

A molecular switch in mouse CD1d modulates natural killer T cell activation by alpha-galactosylsphingamides.

Wang, J.,Guillaume, J.,Janssens, J. et al.
(2019) J.Biol.Chem. 294 : 14345 - 14356

PDB ID: 6C5M