Brand  (β version)

PDB ID: 6BH2

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Ligands
Code Name Style Show Link
90V N-{(3r)-1-[3-(propan-2-yl)-1h-pyrazole-5-carbonyl]pyrrolidin-3-yl}cyclopropanecarboxamide PoSSuM
EDO 1,2-ethanediol PoSSuM
GOL Glycerol PoSSuM
MN Manganese (II) ion PoSSuM
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Structure summary

Code : 6BH2   PDBj   RCSB PDB   PDBe
Header : OXIDOREDUCTASE/INHIBITOR
Title : LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR (R)-N-(1-(3-isopropyl-1H-pyrazole-5-carbonyl)pyrrolidin-3-yl)cyclopropanecarboxamide (Compound N54)
Release Data : 2018-03-28
Compound :
mol_id molecule chains synonym
1 Lysine-specific demethylase 5A, linked KDM5A JMJ domain A Histone demethylase JARID1A,Jumonji/ARID domain-containing protein 1A,Retinoblastoma-binding protein 2,RBBP-2
ec: 1.14.11.-
Source :
mol_id organism_scientific organism_common expression_system
1 Homo sapiens  (taxid:9606) Human Escherichia coli  (taxid:469008)
gene: KDM5A, JARID1A, RBBP2, RBP2
expression_system_strain: BL21(DE3)
expression_system_variant: Gold C-Plus
Authors : Horton, J.R., Cheng, X.
Keywords : DEMETHYLASE INHIBITION, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX, OXIDOREDUCTASE, OXIDOREDUCTASE-INHIBITOR complex
Exp. method : X-RAY DIFFRACTION ( 1.447 Å )
Citation :

Insights into the Action of Inhibitor Enantiomers against Histone Lysine Demethylase 5A.

Horton, J.R.,Liu, X.,Wu, L.  et al.
(2018)  J. Med. Chem.  61 : 3193 - 3208

PubMed: 29537847
DOI: 10.1021/acs.jmedchem.8b00261

Structural Basis for KDM5A Histone Lysine Demethylase Inhibition by Diverse Compounds.

Horton, J.R.,Liu, X.,Gale, M.  et al.
(2016)  Cell Chem Biol  23 : 769 - 781

PubMed: 27427228
DOI: 10.1016/j.chembiol.2016.06.006

Characterization of a Linked Jumonji Domain of the KDM5/JARID1 Family of Histone H3 Lysine 4 Demethylases.

Horton, J.R.,Engstrom, A.,Zoeller, E.L.  et al.
(2016)  J. Biol. Chem.  291 : 2631 - 2646

PubMed: 26645689
DOI: 10.1074/jbc.M115.698449

Reaction

Chain : A
UniProt : P29375 (KDM5A_HUMAN)
Reaction: EC: Evidence:
Physiological Direction:
3 2-oxoglutarate + N(6),N(6),N(6)-trimethyl-L-lysyl(4)- [histone H3] + 3 O2 = 3 CO2 + 3 formaldehyde + L-lysyl(4)-[histone H3] + 3 succinate 1.14.11.67 PubMed:17320160, PubMed:17320161, PubMed:17320163
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