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Ligands
Code Name Style Show Link
CO Cobalt (II) ion
CPH (1s)-5-deoxy-1-O-methyl-1-C-[(2r,3s)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose
1GL 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose
ARI (2r,3r,6r)-6-hydroxy-2-methyltetrahydro-2h-pyran-3-yl acetate
CDR (2r,5s,6r)-6-methyltetrahydro-2h-pyran-2,5-diol
ERI 3-C-methyl-4-O-acetyl-alpha-L-olivopyranose
: Polysaccharide
Non-standard Residues
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Glycosylation
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Modification
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Code : 5YZE   PDBj   RCSB PDB   PDBe
Header : ANTIBIOTICS/DNA
Title : Crystal structure of the [Co2+-(chromomycin A3)2]-D(CCG)3 complex
Release Data : 2018-10-17
Compound :
mol_id molecule chains
1 DNA (5'-D(*TP*CP*CP*GP*CP*CP*GP*CP*CP*GP*A)-3') A,B
Source :
mol_id organism_scientific
1 Synthetic construct  (taxid:32630)
synthetic: yes
Authors : Hou, M.H., Chen, Y.W., Wu, P.C., Satange, R.B.
Keywords : Drug-DNA complex, Chromomycin A3, CCG repeats, i-motif, flipout, DNA, ANTIBIOTICS-DNA complex
Exp. method : X-RAY DIFFRACTION ( 1.87 Å )
Citation :

CoII(Chromomycin)2 Complex Induces a Conformational Change of CCG Repeats from i-Motif to Base-Extruded DNA Duplex

Chen, Y.W.,Satange, R.,Wu, P.C.  et al.
(2018)  Int J Mol Sci  19

PubMed: 30227633
DOI: 10.3390/ijms19092796