Brand  (β version)

PDB ID: 5ODI

Hetero Atom Contents

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Ligands
Code Name Style Show Link
9S8 Non-cubane [4Fe-4S]-cluster PoSSuM
ACT Acetate ion PoSSuM
COM 1-thioethanesulfonic acid PoSSuM
FAD Flavin-adenine dinucleotide PoSSuM
FE Fe (III) ion PoSSuM
FES Fe2/s2 (inorganic) cluster PoSSuM
GOL Glycerol PoSSuM
NFU Formyl[bis(hydrocyanato-1kappac)]ironnickel(Fe-ni) PoSSuM
PE3 3,6,9,12,15,18,21,24,27,30,33,36,39-tridecaoxahentetracontane-1,41-diol PoSSuM
SF4 Iron/sulfur cluster PoSSuM
TRS 2-amino-2-hydroxymethyl-propane-1,3-diol PoSSuM
Non-standard Residues
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Structure summary

Code : 5ODI   PDBj   RCSB PDB   PDBe
Header : OXIDOREDUCTASE
Title : Heterodisulfide reductase / [NiFe]-hydrogenase complex from Methanothermococcus thermolithotrophicus cocrystallized with CoM-SH
Release Data : 2017-08-30
Compound :
mol_id molecule chains
1 Heterodisulfide reductase, subunit A A,G
mutation: Wild-type
mol_id molecule chains
2 Heterodisulfide reductase, subunit B B,H
ec: 1.8.98.1
mutation: Wild-type
other_details: This subunit contains two pentacoordinated non cubane [4Fe4S] clusters
mol_id molecule chains
3 Heterodisulfide reductase, subunit C C,I
mutation: Wild-type
mol_id molecule chains
4 Methyl-viologen reducing hydrogenase, subunit D D,J
mutation: Wild-type
mol_id molecule chains
5 Methyl-viologen reducing hydrogenase, subunit G E,K
ec: 1.12.1.2
mutation: Wild-type
mol_id molecule chains
6 Methyl-viologen reducing hydrogenase, subunit A F,L
ec: 1.12.1.2
mutation: Wild-type
other_details: The C-terminus has been post-translationally cleaved
Source :
mol_id organism_scientific
1 Methanothermococcus thermolithotrophicus DSM 2095  (taxid:523845)
variant: /
cell_line: /
atcc: /
organ: /
tissue: /
mol_id organism_scientific
2 Methanothermococcus thermolithotrophicus DSM 2095  (taxid:523845)
variant: /
cell_line: /
atcc: /
organ: /
tissue: /
mol_id organism_scientific
3 Methanothermococcus thermolithotrophicus DSM 2095  (taxid:523845)
variant: /
cell_line: /
atcc: /
organ: /
tissue: /
mol_id organism_scientific
4 Methanothermococcus thermolithotrophicus DSM 2095  (taxid:523845)
variant: /
cell_line: /
atcc: /
organ: /
tissue: /
mol_id organism_scientific
5 Methanothermococcus thermolithotrophicus DSM 2095  (taxid:523845)
variant: /
cell_line: /
atcc: /
organ: /
tissue: /
mol_id organism_scientific
6 Methanothermococcus thermolithotrophicus DSM 2095  (taxid:523845)
variant: /
cell_line: /
atcc: /
organ: /
tissue: /
Authors : Wagner, T., Koch, J., Ermler, U., Shima, S.
Keywords : Heterodisulfide reductase, [NiFe]-hydrogenase, FeS cluster, ferredoxin, CCG motif, methanogenesis, flavoprotein, flavin-based electron bifurcation, [2Fe-2S] cluster, macromolecular complex, anaerobic, thioredoxin, metabolism, oxydoreductase., OXIDOREDUCTASE
Exp. method : X-RAY DIFFRACTION ( 2.40 Å )
Citation :

Methanogenic heterodisulfide reductase (HdrABC-MvhAGD) uses two noncubane [4Fe-4S] clusters for reduction.

Wagner, T.,Koch, J.,Ermler, U.  et al.
(2017)  Science  357 : 699 - 703

PubMed: 28818947
DOI: 10.1126/science.aan0425