Het-PDB Navi2 (PDB: 5NMB)

The number of atoms exceeds 100,000.
So, it can not be displayed here.

Select unit:

Select hetatm:

information

centroid:

interaction residue:

Select chain: Sequence Hide other chain(s)

Data format:

Color scheme of protein:

Ligands
Code	Name		Style	Show	Link
9CZ	(1~{R},3~{S},5~{z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(1~{S})-1-[(2~{S},5~{R})-5-(2-oxidanylpropan-2-yl)oxolan-2-yl]ethyl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol				PoSSuM

Non-standard Residues
Code	Name	Show

Glycosylation
Code	Name	Emphasize

Modification
Code	Name	Show

Download interaction data: 5NMB

Code :

5NMB PDBj RCSB PDB PDBe

Header :

TRANSCRIPTION

Title :

Structure-activity relationship study of vitamin D analogs with oxolane group in their side chain

Release Data :

2017-05-24

Compound :

mol_id	molecule	chains	synonym
1	Vitamin D3 receptor A	A2	VDR-A,1,25-dihydroxyvitamin D3 receptor A,Nuclear receptor subfamily 1 group I member 1-A
	fragment: UNP residues 156-453

mol_id	molecule	chains	synonym
2	Nuclear receptor coactivator 1	B2	NCoA-1,Class E basic helix-loop-helix protein 74,bHLHe74,Protein Hin-2,RIP160,Renal carcinoma antigen NY-REN-52,Steroid receptor coactivator 1,SRC-1
	ec: 2.3.1.48 fragment: UNP residues 686-700

Source :

mol_id	organism_scientific	organism_common	expression_system
1	Danio rerio (taxid:7955)	Zebrafish	Escherichia coli (taxid:562)
	gene: vdra, nr1i1a, vdr

mol_id	organism_scientific	organism_common
2	Homo sapiens (taxid:9606)	Human
	synthetic: yes

Authors :

Rochel, N., Belorusova, A.Y.

Keywords :

transcription factor, transcriotion, TRANSCRIPTION

Exp. method :

X-RAY DIFFRACTION ( 2.500 Å )

Citation :

Structure-activity relationship study of vitamin D analogs with oxolane group in their side chain.

Belorusova, A.Y.,Martinez, A.,Gandara, Z. et al.
(2017) Eur J Med Chem 134 : 86 - 96

Chain :

UniProt :

Q15788 (NCOA1_HUMAN)

Reaction:	EC:	Evidence:
Reaction:	Physiological Direction:	Evidence:
acetyl-CoA + L-lysyl-[protein] = CoA + H(+) + N(6)-acetyl-L- lysyl-[protein]	2.3.1.48	-
	-	-

PDB ID: 5NMB