Brand  (β version)

PDB ID: 5FZH

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Ligands
Code Name Style Show Link
0TI (3r)-5-fluoro-3-hydroxy-1,3-dihydro-2h-indol-2-one PoSSuM
CL Chloride ion PoSSuM
DMS Dimethyl sulfoxide PoSSuM
EDO 1,2-ethanediol PoSSuM
EPE 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid PoSSuM
MN Manganese (II) ion PoSSuM
ZN Zinc ion PoSSuM
Non-standard Residues
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Structure summary

Code : 5FZH   PDBj   RCSB PDB   PDBe
Header : OXIDOREDUCTASE
Title : Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 4,5-dihydronaphtho(1,2-B)thiophene-2- carboxylicacid (N11181a) (ligand modelled based on PANDDA event map, SGC - Diamond I04-1 fragment screening)
Release Data : 2016-05-25
Compound :
mol_id molecule chains synonym
1 LYSINE-SPECIFIC DEMETHYLASE 5B A CANCER/TESTIS ANTIGEN 31, CT31, HISTONE DEMETHYLASE JARID1B, JUMONJI/ARID DOMAIN-CONTAINING PROTEIN 1B, PLU-1, RETINOBLASTOMA-BINDING PROTEIN 2 HOMOLOG 1, RBP2-H1
ec: 1.14.11.-
fragment: JMJC DOMAIN, RESIDUES 26-101,374-770
Source :
mol_id organism_scientific organism_common expression_system
1 HOMO SAPIENS  (taxid:9606) HUMAN SPODOPTERA FRUGIPERDA  (taxid:7108)
expression_system_common: FALL ARMYWORM
expression_system_cell_line: SF9
expression_system_vector_type: BACULOVIRUS
expression_system_plasmid: PFB-LIC-BSE
Authors : Nowak, R., Krojer, T., Johansson, C., Kupinska, K., Szykowska, A., Pearce, N., Talon, R., Collins, P., Gileadi, C., Strain-Damerell, C., Burgess-Brown, N.A., Arrowsmith, C.H., Bountra, C., Edwards, A.M., von Delft, F., Brennan, P.E., Oppermann, U.
Keywords : OXIDOREDUCTASE, JARID1B, PLU1, FRAGMENT SCREENING, STRUCTURAL GENOMICS CONSORTIUM, SGC, DIAMOND I04-1, PANDDA
Exp. method : X-RAY DIFFRACTION ( 2.090 Å )
Citation :

Crystal Structure of the Catalytic Domain of Human Jarid1B in Complex with Maybridge Fragment 4,5-Dihydronaphtho(1,2-B)Thiophene-2-Carboxylicacid (N11181A) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)

Nowak, R.,Krojer, T.,Johansson, C.  et al.
To be Published 

Reaction

Chain : A
UniProt : Q9UGL1 (KDM5B_HUMAN)
Reaction: EC: Evidence:
Physiological Direction:
3 2-oxoglutarate + N(6),N(6),N(6)-trimethyl-L-lysyl(4)- [histone H3] + 3 O2 = 3 CO2 + 3 formaldehyde + L-lysyl(4)-[histone H3] + 3 succinate 1.14.11.67 UniProtKB:Q80Y84
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