Brand  (β version)

PDB ID: 5AYF

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Ligands
Code Name Style Show Link
C7H 4-(dibenzo[1,2-a:2',1'-D][7]annulen-11-ylidene)-1-methyl-piperidine PoSSuM
SAM S-adenosylmethionine PoSSuM
TRS 2-amino-2-hydroxymethyl-propane-1,3-diol PoSSuM
Non-standard Residues
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Structure summary

Code : 5AYF   PDBj   RCSB PDB   PDBe
Header : TRANSFERASE/TRANSFERASE INHIBITOR
Title : Crystal structure of SET7/9 in complex with cyproheptadine
Release Data : 2016-04-27
Compound :
mol_id molecule chains synonym
1 Histone-lysine N-methyltransferase SETD7 A Histone H3-K4 methyltransferase SETD7,H3-K4-HMTase SETD7,Lysine N-methyltransferase 7,SET domain-containing protein 7,SET7/9
ec: 2.1.1.43
fragment: UNP residues 111-366
Source :
mol_id organism_scientific organism_common expression_system
1 Homo sapiens  (taxid:9606) Human Cell-free synthesis
gene: SETD7, KIAA1717, KMT7, SET7, SET9
expression_system_vector_type: plasmid
expression_system_plasmid: PX100709-08
Authors : Niwa, H., Handa, N., Takemoto, Y., Ito, A., Tomabechi, Y., Umehara, T., Shirouzu, M., Yoshida, M., Yokoyama, S.
Keywords : Set domain, methyltransferase, inhibitor, TRANSFERASE-TRANSFERASE INHIBITOR complex
Exp. method : X-RAY DIFFRACTION ( 2.005 Å )
Citation :

Identification of Cyproheptadine as an Inhibitor of SET Domain Containing Lysine Methyltransferase 7/9 (Set7/9) That Regulates Estrogen-Dependent Transcription

Takemoto, Y.,Ito, A.,Niwa, H.  et al.
(2016)  J.Med.Chem.  59 : 3650 - 3660

PubMed: 27088648
DOI: 10.1021/acs.jmedchem.5b01732

Reaction

Chain : A
UniProt : Q8WTS6 (SETD7_HUMAN)
Reaction: EC: Evidence:
Physiological Direction:
L-lysyl(4)-[histone H3] + S-adenosyl-L-methionine = N(6)- methyl-L-lysyl(4)-[histone H3] + S-adenosyl-L-homocysteine + H(+) 2.1.1.364 PROSITE-ProRule:PRU00910, PubMed:12540855
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L-lysyl-[protein] + S-adenosyl-L-methionine = N(6)-methyl-L- lysyl-[protein] + S-adenosyl-L-homocysteine + H(+) - PubMed:15099517, PubMed:15525938, PubMed:16415881
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