Brand  (β version)

PDB ID: 5ZWA

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Ligands
Code Name Style Show Link
ADP Adenosine-5'-diphosphate PoSSuM
EDO 1,2-ethanediol PoSSuM
GOL Glycerol PoSSuM
MG Magnesium ion PoSSuM
PLP Pyridoxal-5'-phosphate PoSSuM
PO4 Phosphate ion PoSSuM
SO4 Sulfate ion PoSSuM
Non-standard Residues
Code Name Show
CME S,S-(2-hydroxyethyl)thiocysteine
JLP (2s)-2-azanyl-6-[E-[5-(hydroxymethyl)-2-methyl-3-oxidanyl-pyridin-4-yl]methylideneamino]hexanoic acid
Glycosylation
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Modification
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Structure summary

Code : 5ZWA   PDBj   RCSB PDB   PDBe
Header : TRANSFERASE
Title : Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium in complex with ADP, PL-linked to Lys233 via Schiff base in protomer A and the product (PLP) in protomer B
Release Data : 2019-05-29
Compound :
mol_id molecule chains synonym
1 Pyridoxine/pyridoxal/pyridoxamine kinase A PN/PL/PM kinase
ec: 2.7.1.35
mol_id molecule chains synonym
2 Pyridoxine/pyridoxal/pyridoxamine kinase B PN/PL/PM kinase
ec: 2.7.1.35
Source :
mol_id organism_scientific expression_system
1 Salmonella choleraesuis  (taxid:28901) Escherichia coli BL21  (taxid:511693)
gene: pdxK
expression_system_strain: BL21
mol_id organism_scientific expression_system
2 Salmonella choleraesuis  (taxid:28901) Escherichia coli BL21  (taxid:511693)
gene: pdxK
expression_system_strain: BL21
expression_system_plasmid: pET-22b(+)
Authors : Deka, G., Benazir, J.F., Kalyani, J.N., Savithri, H.S., Murthy, M.R.N.
Keywords : Pyridoxal kinase, bound phosphate, Salmonella typhimurium, TRANSFERASE
Exp. method : X-RAY DIFFRACTION ( 2.45 Å )
Citation :

Structural and functional studies on Salmonella typhimurium pyridoxal kinase: the first structural evidence for the formation of Schiff base with the substrate.

Deka, G.,Kalyani, J.N.,Jahangir, F.B.  et al.
(2019)  Febs J.  286 : 3684 - 3700

PubMed: 31116912
DOI: 10.1111/febs.14933

Reaction

Chain : B
UniProt : A0A0M0PWM4
Reaction : -