Brand  (β version)

PDB ID: 5ZJI

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Ligands
Code Name Style Show Link
BCR Beta-carotene PoSSuM
CHL Chlorophyll B PoSSuM
CL0 Chlorophyll a isomer PoSSuM
CLA Chlorophyll a PoSSuM
LHG 1,2-dipalmitoyl-phosphatidyl-glycerole PoSSuM
LMG 1,2-distearoyl-monogalactosyl-diglyceride PoSSuM
LUT (3r,3'R,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol PoSSuM
NEX (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol PoSSuM
PQN Phylloquinone PoSSuM
SF4 Iron/sulfur cluster PoSSuM
XAT (3s,5r,6s,3'S,5'R,6'S)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol PoSSuM
DGD Digalactosyl diacyl glycerol (dgdg) PoSSuM
LMU Dodecyl-alpha-D-maltoside PoSSuM
Non-standard Residues
Code Name Show
TPO Phosphothreonine
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 5ZJI   PDBj   RCSB PDB   PDBe
Header : MEMBRANE PROTEIN
Title : Structure of photosystem I supercomplex with light-harvesting complexes I and II
Release Data : 2018-06-20
Compound :
mol_id molecule chains
1 Chlorophyll a-b binding protein, chloroplastic 1
mol_id molecule chains
2 Chlorophyll a-b binding protein, chloroplastic 2
mol_id molecule chains
3 Chlorophyll a-b binding protein, chloroplastic 3
mol_id molecule chains
4 Chlorophyll a-b binding protein, chloroplastic 4
mol_id molecule chains synonym
5 Photosystem I P700 chlorophyll a apoprotein A1 A PSI-A,PsaA
ec: 1.97.1.12
mol_id molecule chains synonym
6 Photosystem I P700 chlorophyll a apoprotein A2 B PSI-B,PsaB
ec: 1.97.1.12
mol_id molecule chains
7 photosystem I subunit VII C
mol_id molecule chains synonym
8 Photosystem I reaction center subunit II D Photosystem I reaction center subunit II-1 chloroplastic
mol_id molecule chains
9 Photosystem I reaction center subunit IV A E
mol_id molecule chains
10 Photosystem I reaction center subunit III F
mol_id molecule chains
11 Photosystem I reaction center subunit V G
mol_id molecule chains synonym
12 Photosystem I reaction center subunit VI, chloroplastic H PSI-H,Light-harvesting complex I 11 kDa protein
mol_id molecule chains synonym
13 Photosystem I reaction center subunit VIII I PSI-I
mol_id molecule chains synonym
14 Photosystem I reaction center subunit IX J PSI-J
mol_id molecule chains synonym
15 Photosystem I reaction center subunit psaK K Photosystem I reaction center6
mol_id molecule chains
16 Photosystem I reaction center subunit XI L
mol_id molecule chains
17 16kDa membrane protein O
mol_id molecule chains
18 Photosystem I reaction center subunit N N
mol_id molecule chains synonym
19 Chlorophyll a-b binding protein 1, chloroplastic X,Z LHCII type I CAB-1,LHCP
mol_id molecule chains synonym
20 Chlorophyll a-b binding protein, chloroplastic Y photosystem II light harvesting complex gene 2.1
Source :
mol_id organism_scientific organism_common
1 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
2 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
3 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
4 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
5 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
6 Zea mays subsp. mays  (taxid:381124) Maize
mol_id organism_scientific organism_common
7 Zea mays subsp. mays  (taxid:381124) Maize
mol_id organism_scientific organism_common
8 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
9 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
10 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
11 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
12 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
13 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
14 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
15 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
16 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
17 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
18 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
19 Zea mays  (taxid:4577) Maize
mol_id organism_scientific organism_common
20 Zea mays  (taxid:4577) Maize
Authors : Pan, X.W., Ma, J., Su, X.D., Cao, P., Liu, Z.F., Zhang, X.Z., Li, M.
Keywords : Photosystem, Antenna, Supercomplex, State transition, MEMBRANE PROTEIN
Exp. method : ELECTRON MICROSCOPY ( 3.3 Å )
Citation :

Structure of the maize photosystem I supercomplex with light-harvesting complexes I and II.

Pan, X.,Ma, J.,Su, X.  et al.
(2018)  Science  360 : 1109 - 1113

PubMed: 29880686
DOI: 10.1126/science.aat1156

Reaction

Chain : 1
UniProt : B6SSN3 (B6SSN3_MAIZE)
Reaction : -
Chain : 2
UniProt : B6T892 (B6T892_MAIZE)
Reaction : -
Chain : 3
UniProt : B6SUC4 (B6SUC4_MAIZE)
Reaction : -
Chain : 4
UniProt : B6SZR1 (B6SZR1_MAIZE)
Reaction : -
Chain : A
UniProt : P04966 (PSAA_MAIZE)
Reaction: EC: Evidence:
Physiological Direction:
hnu + oxidized [2Fe-2S]-[ferredoxin] + reduced [plastocyanin] = oxidized [plastocyanin] + reduced [2Fe-2S]-[ferredoxin] 1.97.1.12 HAMAP- Rule:MF_00458
-
Chain : B
UniProt : A0A059Q6U2 (A0A059Q6U2_MAIZE)
Reaction: EC: Evidence:
Physiological Direction:
hnu + oxidized [2Fe-2S]-[ferredoxin] + reduced [plastocyanin] = oxidized [plastocyanin] + reduced [2Fe-2S]-[ferredoxin] 1.97.1.12 ARBA:ARBA00000994, HAMAP- Rule:MF_00482
-
Chain : D
UniProt : B4FAW3 (B4FAW3_MAIZE)
Reaction : -
Chain : E
UniProt : A0A1D6HY75 (A0A1D6HY75_MAIZE)
Reaction : -
Chain : F
UniProt : B6SRI3 (B6SRI3_MAIZE)
Reaction : -
Chain : G
UniProt : B6U534 (B6U534_MAIZE)
Reaction : -
Chain : H
UniProt : O65101 (PSAH_MAIZE)
Reaction : -
Chain : I
UniProt : P30980 (PSAI_MAIZE)
Reaction : -
Chain : J
UniProt : P62596 (PSAJ_MAIZE)
Reaction : -
Chain : K
UniProt : B6TR16 (B6TR16_MAIZE)
Reaction : -
Chain : L
UniProt : B6STT2 (B6STT2_MAIZE)
Reaction : -
Chain : O
UniProt : B6SQZ7 (B6SQZ7_MAIZE)
Reaction : -
Chain : N
UniProt : B6TXS5 (B6TXS5_MAIZE)
Reaction : -
Chain : X, Z
UniProt : P12329 (CB21_MAIZE)
Reaction : -
Chain : Y
UniProt : B6T1H1 (B6T1H1_MAIZE)
Reaction : -