Brand  (β version)

PDB ID: 5ZGB

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Ligands
Code Name Style Show Link
1DO 1-dodecanol PoSSuM
3XQ (2s)-2,3-dihydroxypropyl octadecanoate PoSSuM
BCR Beta-carotene PoSSuM
CL0 Chlorophyll a isomer PoSSuM
CLA Chlorophyll a PoSSuM
LHG 1,2-dipalmitoyl-phosphatidyl-glycerole PoSSuM
PQN Phylloquinone PoSSuM
SF4 Iron/sulfur cluster PoSSuM
ZEX (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol PoSSuM
BGC Beta-D-glucopyranose PoSSuM
DGD Digalactosyl diacyl glycerol (dgdg) PoSSuM
Non-standard Residues
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Glycosylation
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Structure summary

Code : 5ZGB   PDBj   RCSB PDB   PDBe
Header : PHOTOSYNTHESIS
Title : Cryo-EM structure of the red algal PSI-LHCR
Release Data : 2018-04-25
Compound :
mol_id molecule chains synonym
1 PsaA A PSI-A,PsaA
ec: 1.97.1.12
mol_id molecule chains synonym
2 PsaB B PSI-B,PsaB
ec: 1.97.1.12
mol_id molecule chains synonym
3 PsaC C PSI-C,PsaC
ec: 1.97.1.12
mol_id molecule chains
4 PsaD D
mol_id molecule chains
5 PsaE E
mol_id molecule chains
6 PsaF F
mol_id molecule chains
7 PsaI I
mol_id molecule chains synonym
8 PsaJ J PSI-J
mol_id molecule chains
9 PsaK K
mol_id molecule chains synonym
10 PsaL L PSI subunit V,PSI-L
mol_id molecule chains synonym
11 PsaM M PSI-M
mol_id molecule chains
12 PsaO O
mol_id molecule chains
13 Lhcr1 1,4
mol_id molecule chains
14 Lhcr2 2,5
mol_id molecule chains
15 Lhcr3 3
Source :
mol_id organism_scientific organism_common
1 Cyanidioschyzon merolae (strain 10D)  (taxid:280699) Red alga
strain: 10D
mol_id organism_scientific organism_common
2 Cyanidioschyzon merolae (strain 10D)  (taxid:280699) Red alga
strain: 10D
mol_id organism_scientific organism_common
3 Cyanidioschyzon merolae (strain 10D)  (taxid:280699) Red alga
strain: 10D
mol_id organism_scientific organism_common
4 Cyanidioschyzon merolae (strain 10D)  (taxid:280699) Red alga
strain: 10D
mol_id organism_scientific organism_common
5 Cyanidioschyzon merolae (strain 10D)  (taxid:280699) Red alga
strain: 10D
mol_id organism_scientific organism_common
6 Cyanidioschyzon merolae (strain 10D)  (taxid:280699) Red alga
strain: 10D
mol_id organism_scientific organism_common
7 Cyanidioschyzon merolae (strain 10D)  (taxid:280699) Red alga
strain: 10D
mol_id organism_scientific organism_common
8 Cyanidioschyzon merolae (strain 10D)  (taxid:280699) Red alga
strain: 10D
mol_id organism_scientific organism_common
9 Cyanidioschyzon merolae (strain 10D)  (taxid:280699) Red alga
strain: 10D
mol_id organism_scientific organism_common
10 Cyanidioschyzon merolae (strain 10D)  (taxid:280699) Red alga
strain: 10D
mol_id organism_scientific organism_common
11 Cyanidioschyzon merolae (strain 10D)  (taxid:280699) Red alga
strain: 10D
mol_id organism_scientific organism_common
12 Cyanidioschyzon merolae (strain 10D)  (taxid:280699) Red alga
strain: 10D
mol_id organism_scientific organism_common
13 Cyanidioschyzon merolae (strain 10D)  (taxid:280699) Red alga
strain: 10D
mol_id organism_scientific organism_common
14 Cyanidioschyzon merolae (strain 10D)  (taxid:280699) Red alga
strain: 10D
mol_id organism_scientific organism_common
15 Cyanidioschyzon merolae strain 10D  (taxid:280699) Red alga
strain: 10D
Authors : Pi, X.
Keywords : super-complex, red alga, photosynthesis, PSI-5Lhcr
Exp. method : ELECTRON MICROSCOPY ( 3.63 Å )
Citation :

Unique organization of photosystem I-light-harvesting supercomplex revealed by cryo-EM from a red alga

Pi, X.,Tian, L.,Dai, H.E.  et al.
(2018)  Proc. Natl. Acad. Sci. U.S.A.  115 : 4423 - 4428

PubMed: 29632169
DOI: 10.1073/pnas.1722482115

Reaction

Chain : A
UniProt : Q85FY7 (PSAA_CYAM1)
Reaction: EC: Evidence:
Physiological Direction:
hnu + oxidized [2Fe-2S]-[ferredoxin] + reduced [plastocyanin] = oxidized [plastocyanin] + reduced [2Fe-2S]-[ferredoxin] 1.97.1.12 HAMAP- Rule:MF_00458
-
Chain : B
UniProt : Q85FY6 (PSAB_CYAM1)
Reaction: EC: Evidence:
Physiological Direction:
hnu + oxidized [2Fe-2S]-[ferredoxin] + reduced [plastocyanin] = oxidized [plastocyanin] + reduced [2Fe-2S]-[ferredoxin] 1.97.1.12 HAMAP- Rule:MF_00482
-
Chain : C
UniProt : Q85G47 (PSAC_CYAM1)
Reaction: EC: Evidence:
Physiological Direction:
hnu + oxidized [2Fe-2S]-[ferredoxin] + reduced [plastocyanin] = oxidized [plastocyanin] + reduced [2Fe-2S]-[ferredoxin] 1.97.1.12 HAMAP- Rule:MF_01303
-
Chain : D
UniProt : Q85FY0 (Q85FY0_CYAM1)
Reaction : -
Chain : E
UniProt : Q85FZ1 (Q85FZ1_CYAM1)
Reaction : -
Chain : F
UniProt : Q85FS9 (Q85FS9_CYAM1)
Reaction : -
Chain : I
UniProt : Q85FQ6 (Q85FQ6_CYAM1)
Reaction : -
Chain : J
UniProt : Q85FS8 (PSAJ_CYAM1)
Reaction : -
Chain : K
UniProt : Q85G51 (Q85G51_CYAM1)
Reaction : -
Chain : L
UniProt : Q85FP8 (PSAL_CYAM1)
Reaction : -
Chain : M
UniProt : Q85G73 (Q85G73_CYAM1)
Reaction : -
Chain : O
UniProt : M1VFJ4 (M1VFJ4_CYAM1)
Reaction : -
Chain : 1, 4
UniProt : M1VKK5 (M1VKK5_CYAM1)
Reaction : -
Chain : 2, 5
UniProt : M1UU36 (M1UU36_CYAM1)
Reaction : -