Brand  (β version)

PDB ID: 5Y5S

Hetero Atom Contents

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Ligands
Code Name Style Show Link
BCL Bacteriochlorophyll a PoSSuM
BPH Bacteriopheophytin a PoSSuM
CA Calcium ion PoSSuM
CDL Cardiolipin PoSSuM
CRT Spirilloxanthin PoSSuM
FE Fe (III) ion PoSSuM
GOL Glycerol PoSSuM
HEC Heme C PoSSuM
LDA Lauryl dimethylamine-N-oxide PoSSuM
LHG 1,2-dipalmitoyl-phosphatidyl-glycerole PoSSuM
MG Magnesium ion PoSSuM
MQ8 Menaquinone 8 PoSSuM
PEF Di-palmitoyl-3-sn-phosphatidylethanolamine PoSSuM
PGV (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate PoSSuM
SO4 Sulfate ion PoSSuM
UNL Unknown ligand PoSSuM
UQ8 Ubiquinone-8 PoSSuM
LMT Dodecyl-beta-D-maltoside PoSSuM
Non-standard Residues
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Glycosylation
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Structure summary

Code : 5Y5S   PDBj   RCSB PDB   PDBe
Header : PHOTOSYNTHESIS
Title : Structure of photosynthetic LH1-RC super-complex at 1.9 angstrom resolution
Release Data : 2018-04-11
Compound :
mol_id molecule chains
1 Photosynthetic reaction center cytochrome c subunit C
mol_id molecule chains
2 Photosynthetic reaction center L subunit L
mol_id molecule chains
3 Photosynthetic reaction center M subunit M
mol_id molecule chains
4 Photosynthetic reaction center H subunit H
mol_id molecule chains
5 LH1 alpha polypeptide A,D,F,I,K,O,Q,S,U,W,Y,1,3,5,7,9
mol_id molecule chains
6 LH1 beta polypeptide B,E,G,J,N,P,R,T,V,X,Z,2,4,6,8,0
Source :
mol_id organism_scientific
1 Thermochromatium tepidum  (taxid:1050)
mol_id organism_scientific
2 Thermochromatium tepidum  (taxid:1050)
mol_id organism_scientific
3 Thermochromatium tepidum  (taxid:1050)
mol_id organism_scientific
4 Thermochromatium tepidum  (taxid:1050)
mol_id organism_scientific
5 Thermochromatium tepidum  (taxid:1050)
mol_id organism_scientific
6 Thermochromatium tepidum  (taxid:1050)
Authors : Yu, L.-J., Suga, M., Wang-Otomo, Z.-Y., Shen, J.-R.
Keywords : LH1-RC, photosynthesis, purple bacteria
Exp. method : X-RAY DIFFRACTION ( 1.9000 Å )
Citation :

Structure of photosynthetic LH1-RC supercomplex at 1.9 angstrom resolution.

Yu, L.-J.,Suga, M.,Wang-Otomo, Z.-Y.  et al.
(2018)  Nature  556 : 209 - 213

PubMed: 29618814
DOI: 10.1038/s41586-018-0002-9

Reaction

Chain : C
UniProt : D2Z0P5 (CYCR_THETI)
Reaction : -
Chain : L
UniProt : D2Z0P3 (D2Z0P3_THETI)
Reaction : -
Chain : M
UniProt : A8ASG6 (A8ASG6_THETI)
Reaction : -
Chain : H
UniProt : D2Z0P9 (D2Z0P9_THETI)
Reaction : -
Chain : A, D, F, I, K, O, Q, S, U, W, Y, 1, 3, 5, 7, 9
UniProt : D2Z0P2 (D2Z0P2_THETI)
Reaction : -
Chain : B, E, G, J, N, P, R, T, V, X, Z, 2, 4, 6, 8, 0
UniProt : D2Z0P1 (D2Z0P1_THETI)
Reaction : -