Brand  (β version)

PDB ID: 5WBN

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Ligands
Code Name Style Show Link
9ZV 3-(3-benzyl-2-oxo-2h-[1,2,4]triazino[2,3-C]quinazolin-6-yl)propanoic acid PoSSuM
ACT Acetate ion PoSSuM
CL Chloride ion PoSSuM
FMT Formic acid PoSSuM
UNX Unknown atom or ion PoSSuM
ZN Zinc ion PoSSuM
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Structure summary

Code : 5WBN   PDBj   RCSB PDB   PDBe
Header : hydrolase/hydrolase inhibitor
Title : Crystal structure of fragment 3-(3-Benzyl-2-oxo-2H-[1,2,4]triazino[2,3-C]quinazolin-6-yl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain
Release Data : 2017-08-02
Compound :
mol_id molecule chains synonym
1 Histone deacetylase 6 A HD6
ec: 3.5.1.98
Source :
mol_id organism_scientific organism_common expression_system
1 Homo sapiens  (taxid:9606) Human Escherichia coli  (taxid:562)
gene: HDAC6, KIAA0901, JM21
expression_system_strain: BL21-CodonPlus(DE3)-RIL
expression_system_vector_type: plasmid
expression_system_plasmid: PET28-LIC
Authors : Harding, R.J., Walker, J.R., Ferreira de Freitas, R., Ravichandran, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.H.
Keywords : HISTONE DEACETYLASE, HDAC, HDAC6, FRAGMENT SCREENING, STRUCTURAL GENOMICS CONSORTIUM, SGC, hydrolase-hydrolase inhibitor complex
Exp. method : X-RAY DIFFRACTION ( 1.6400 Å )
Citation :

Crystal structure of fragment 3-(3-Benzyl-2-oxo-2H-[1,2,4]triazino[2,3-c]quinazolin-6-yl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J.,Walker, J.R.,Ferreira de Freitas, R.  et al.
To be published 

Reaction

Chain : A
UniProt : Q9UBN7 (HDAC6_HUMAN)
Reaction: EC: Evidence:
Physiological Direction:
H2O + N(6)-acetyl-L-lysyl-[histone] = acetate + L-lysyl- [histone] 3.5.1.98 PubMed:10220385
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H2O + N(6)-acetyl-L-lysyl-[alpha-tubulin] = acetate + L-lysyl- [alpha-tubulin] - PubMed:12024216, PubMed:20308065
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