Brand  (β version)

PDB ID: 5VSU

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Ligands
Code Name Style Show Link
Non-standard Residues
Code Name Show
9QV Uridine 2',5'-bis(dihydrogen phosphate)
Glycosylation
Code Name Emphasize
Modification
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Structure summary

Code : 5VSU   PDBj   RCSB PDB   PDBe
Header : SPLICING
Title : Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNA
Release Data : 2018-05-09
Compound :
mol_id molecule chains synonym
1 U4/U6 snRNA-associated-splicing factor PRP24 A U4/U6 snRNP protein
mol_id molecule chains synonym
2 U6 snRNA-associated Sm-like protein LSm2 B Small nuclear ribonucleoprotein D homolog SNP3
mol_id molecule chains synonym
3 U6 snRNA-associated Sm-like protein LSm3 C SmX4 protein
mol_id molecule chains
4 U6 snRNA-associated Sm-like protein LSm4 D
mol_id molecule chains
5 U6 snRNA-associated Sm-like protein LSm5 E
mol_id molecule chains
6 U6 snRNA-associated Sm-like protein LSm6 F
mol_id molecule chains
7 U6 snRNA-associated Sm-like protein LSm7 G
mol_id molecule chains
8 U6 snRNA-associated Sm-like protein LSm8 H
mol_id molecule chains
9 Saccharomyces cerevisiae strain T8 chromosome XII sequence I
Source :
mol_id organism_scientific organism_common expression_system
1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)  (taxid:559292) Baker's yeast Escherichia coli  (taxid:562)
strain: ATCC 204508 / S288c
gene: PRP24, YMR268C, YM8156.10C
mol_id organism_scientific organism_common expression_system
2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)  (taxid:559292) Baker's yeast Escherichia coli  (taxid:562)
strain: ATCC 204508 / S288c
gene: LSM2, SMX5, SNP3, YBL026W, YBL0425
mol_id organism_scientific organism_common expression_system
3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)  (taxid:559292) Baker's yeast Escherichia coli  (taxid:562)
strain: ATCC 204508 / S288c
gene: LSM3, SMX4, USS2, YLR438C-A
mol_id organism_scientific organism_common expression_system
4 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)  (taxid:559292) Baker's yeast Escherichia coli  (taxid:562)
strain: ATCC 204508 / S288c
gene: LSM4, SDB23, USS1, YER112W
mol_id organism_scientific organism_common expression_system
5 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)  (taxid:559292) Baker's yeast Escherichia coli  (taxid:562)
strain: ATCC 204508 / S288c
gene: LSM5, YER146W
mol_id organism_scientific organism_common expression_system
6 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)  (taxid:559292) Baker's yeast Escherichia coli  (taxid:562)
strain: ATCC 204508 / S288c
gene: LSM6, YDR378C, D9481.18
mol_id organism_scientific organism_common expression_system
7 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)  (taxid:559292) Baker's yeast Escherichia coli  (taxid:562)
strain: ATCC 204508 / S288c
gene: LSM7, YNL147W, N1202, N1780
mol_id organism_scientific organism_common expression_system
8 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)  (taxid:559292) Baker's yeast Escherichia coli  (taxid:562)
strain: ATCC 204508 / S288c
gene: LSM8, YJR022W, J1464, YJR83.16
mol_id organism_scientific organism_common expression_system
9 Saccharomyces cerevisiae  (taxid:4932) Baker's yeast Escherichia coli  (taxid:562)
Authors : Montemayor, E.J.
Keywords : Lsm2-8 spliceosome U6 Prp24, SPLICING
Exp. method : X-RAY DIFFRACTION ( 3.100 Å )
Citation :

Architecture of the U6 snRNP reveals specific recognition of 3'-end processed U6 snRNA.

Montemayor, E.J.,Didychuk, A.L.,Yake, A.D.  et al.
(2018)  Nat Commun  9 : 1749 - 1749

PubMed: 29717126
DOI: 10.1038/s41467-018-04145-4

Reaction

Chain : A
UniProt : P49960 (PRP24_YEAST)
Reaction : -
Chain : B
UniProt : P38203 (LSM2_YEAST)
Reaction : -
Chain : C
UniProt : P57743 (LSM3_YEAST)
Reaction : -
Chain : D
UniProt : P40070 (LSM4_YEAST)
Reaction : -
Chain : E
UniProt : P40089 (LSM5_YEAST)
Reaction : -
Chain : F
UniProt : Q06406 (LSM6_YEAST)
Reaction : -
Chain : G
UniProt : P53905 (LSM7_YEAST)
Reaction : -
Chain : H
UniProt : P47093 (LSM8_YEAST)
Reaction : -