Brand  (β version)

PDB ID: 5VHV

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Ligands
Code Name Style Show Link
GOL Glycerol PoSSuM
MES 2-(N-morpholino)-ethanesulfonic acid PoSSuM
NA Sodium ion PoSSuM
9B4 (2r,5r,13r,16r)-9-(hydroxymethyl)-9-{[(2r)-2-hydroxypropoxy]methyl}-5,13-dimethyl-4,7,11,14-tetraoxaheptadecane-2,16-diol PoSSuM
Non-standard Residues
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NRI Phosphoric acid mono-(4-hydroxy-pyrrolidin-3-ylmethyl) ester
Glycosylation
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Modification
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Structure summary

Code : 5VHV   PDBj   RCSB PDB   PDBe
Header : HYDROLASE/DNA
Title : Pseudomonas fluorescens alkylpurine DNA glycosylase AlkC bound to DNA containing an oxocarbenium-intermediate analog
Release Data : 2017-10-25
Compound :
mol_id molecule chains
1 alkylpurine DNA glycosylase AlkC A,B
mol_id molecule chains
2 DNA (5'-D(*TP*GP*TP*CP*CP*AP*(NRI)P*GP*TP*CP*T)-3') C,E
mol_id molecule chains
3 DNA (5'-D(*AP*AP*GP*AP*CP*TP*TP*GP*GP*AP*C)-3') D,F
Source :
mol_id organism_scientific expression_system
1 Pseudomonas fluorescens  (taxid:294) Escherichia coli  (taxid:562)
gene: PFLU_2162
mol_id organism_scientific
2 Synthetic construct  (taxid:32630)
synthetic: yes
mol_id organism_scientific
3 Synthetic construct  (taxid:32630)
synthetic: yes
Authors : Shi, R., Eichman, B.F.
Keywords : DNA alkylation repair enzyme, HYDROLASE-DNA complex
Exp. method : X-RAY DIFFRACTION ( 1.7990 Å )
Citation :

Selective base excision repair of DNA damage by the non-base-flipping DNA glycosylase AlkC.

Shi, R.,Mullins, E.A.,Shen, X.X.  et al.
(2018)  EMBO J.  37 : 63 - 74

PubMed: 29054852
DOI: 10.15252/embj.201797833

Reaction

Chain : A, B
UniProt : C3K795 (C3K795_PSEFS)
Reaction : -