Het-PDB Navi2 (PDB: 5VDH)

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Ligands
Code	Name	Link
7C6	(3s,3as,9bs)-2-[(2h-1,3-benzodioxol-5-yl)sulfonyl]-3,5-dimethyl-1,2,3,3a,5,9b-hexahydro-4h-pyrrolo[3,4-C][1,6]naphthyridin-4-one	PoSSuM
CL	Chloride ion	PoSSuM
GLY	Glycine	PoSSuM
IVM	(2ae,4e,5'S,6s,6'R,7s,8e,11r,13r,15s,17ar,20r,20ar,20bs)-6'-[(2s)-butan-2-yl]-20,20b-dihydroxy-5',6,8,19-tetramethyl-17 -oxo-3',4',5',6,6',10,11,14,15,17,17a,20,20a,20b-tetradecahydro-2h,7h-spiro[11,15-methanofuro[4,3,2-pq][2,6]benzodioxacy clooctadecine-13,2'-pyran]-7-yl 2,6-dideoxy-4-O-(2,6-dideoxy-3-O-methyl-alpha-L-arabino-hexopyranosyl)-3-O-methyl-alpha-L-arabino-hexopyranoside	PoSSuM
ZN	Zinc ion	PoSSuM

Non-standard Residues
Code	Name	Show

Glycosylation
Code	Name	Emphasize
NAG	2-acetamido-2-deoxy-beta-D-glucopyranose

Modification
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Download interaction data: 5VDH

Code :

5VDH PDBj RCSB PDB PDBe

Header :

TRANSPORT PROTEIN

Title :

Crystal Structure of Human Glycine Receptor alpha-3 Bound to AM-3607, Glycine, and Ivermectin

Release Data :

2017-05-24

Compound :

mol_id	molecule	chains
1	Glycine receptor subunit alpha-3	A,B,C,D,E
	fragment: UNP residues 34-342, ATG linker, UNP residues 419-460

Source :

mol_id	organism_scientific	organism_common	expression_system
1	Homo sapiens (taxid:9606)	Human	Spodoptera frugiperda (taxid:7108)
	gene: GLRA3 expression_system_common: Fall armyworm

Authors :

Shaffer, P.L., Huang, X., Chen, H.

Keywords :

Ligand-gated Ion Channel, Neurotransmitter Receptor, Membrane Protein, Cys-loop receptor, Transport Protein

Exp. method :

X-RAY DIFFRACTION ( 2.85 Å )

Citation :

Crystal Structures of Human GlyR alpha 3 Bound to Ivermectin.

Huang, X.,Chen, H.,Shaffer, P.L.
(2017) Structure 25 : 945 - 950.e2

PDB ID: 5VDH