Brand  (β version)

PDB ID: 5V7Q

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Ligands
Code Name Style Show Link
917 N-({(5s)-2-oxo-3-[4-(1,3-thiazol-5-yl)phenyl]-1,3-oxazolidin-5-yl}methyl)acetamide PoSSuM
Non-standard Residues
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Glycosylation
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Structure summary

Code : 5V7Q   PDBj   RCSB PDB   PDBe
Header : RIBOSOME
Title : Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
Release Data : 2017-09-20
Compound :
mol_id molecule chains
1 50S ribosomal protein L32 0
mol_id molecule chains
2 50S ribosomal protein L33 1
mol_id molecule chains
3 50S ribosomal protein L34 2
mol_id molecule chains
4 50S ribosomal protein L35 3
mol_id molecule chains
5 50S ribosomal protein L36 4
mol_id molecule chains
6 50S ribosomal protein L31 6
mol_id molecule chains
7 23S rRNA A
mol_id molecule chains
8 5S ribosomal RNA B
mol_id molecule chains
9 50S ribosomal protein L2 C
mol_id molecule chains
10 50S ribosomal protein L3 D
mol_id molecule chains
11 50S ribosomal protein L4 E
mol_id molecule chains
12 50S ribosomal protein L5 F
mol_id molecule chains
13 50S ribosomal protein L6 G
mol_id molecule chains
14 50S ribosomal protein L9 H
mol_id molecule chains
15 50S ribosomal protein L13 J
mol_id molecule chains
16 50S ribosomal protein L14 K
mol_id molecule chains
17 50S ribosomal protein L15 L
mol_id molecule chains
18 50S ribosomal protein L16 M
mol_id molecule chains
19 50S ribosomal protein L17 N
mol_id molecule chains
20 50S ribosomal protein L18 O
mol_id molecule chains
21 50S ribosomal protein L19 P
mol_id molecule chains
22 50S ribosomal protein L20 Q
mol_id molecule chains synonym
23 LSU ribosomal protein L21p R Ribosomal protein L21 (BL20)
mol_id molecule chains
24 50S ribosomal protein L22 S
mol_id molecule chains
25 50S ribosomal protein L23 T
mol_id molecule chains
26 50S ribosomal protein L24 U
mol_id molecule chains synonym
27 50S ribosomal protein L25 V General stress protein CTC
mol_id molecule chains
28 50S ribosomal protein L27 W
mol_id molecule chains
29 50S ribosomal protein L28 X
mol_id molecule chains
30 50S ribosomal protein L29 Y
mol_id molecule chains
31 50S ribosomal protein L30 Z
Source :
mol_id organism_scientific
1 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
2 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
3 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
4 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
5 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
6 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
7 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
8 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
9 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
10 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
11 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
12 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
13 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
14 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
15 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
16 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
17 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
18 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
19 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
20 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
21 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
22 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
23 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
24 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
25 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
26 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
27 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
28 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
29 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
30 Mycobacterium tuberculosis  (taxid:1773)
mol_id organism_scientific
31 Mycobacterium tuberculosis  (taxid:1773)
Authors : Yang, K., Chang, J.-Y., Cui, Z., Zhang, J.
Keywords : RNA dynamics, Ribosome
Exp. method : ELECTRON MICROSCOPY ( 3.7 Å )
Citation :

Structural insights into species-specific features of the ribosome from the human pathogen Mycobacterium tuberculosis.

Yang, K.,Chang, J.Y.,Cui, Z.  et al.
(2017)  Nucleic Acids Res.  45 : 10884 - 10894

PubMed: 28977617
DOI: 10.1093/nar/gkx785

Reaction

Chain : 0
UniProt : A0A045IMI5 (A0A045IMI5_MYCTX)
Reaction : -
Chain : 1
UniProt : A0A045HU86 (A0A045HU86_MYCTX)
Reaction : -
Chain : 2
UniProt : A0A1L6JUG3
Reaction : -
Chain : 3
UniProt : A0A045KKY9 (A0A045KKY9_MYCTX)
Reaction : -
Chain : 4
UniProt : A0A1L6JSF4
Reaction : -
Chain : 6
UniProt : A0A045HLX7 (A0A045HLX7_MYCTX)
Reaction : -
Chain : C
UniProt : A0A045H5T7 (A0A045H5T7_MYCTX)
Reaction : -
Chain : D
UniProt : A0A045HU18 (A0A045HU18_MYCTX)
Reaction : -
Chain : E
UniProt : A0A045J9H1 (A0A045J9H1_MYCTX)
Reaction : -
Chain : F
UniProt : A0A045HUU0 (A0A045HUU0_MYCTX)
Reaction : -
Chain : G
UniProt : A0A045JJU1 (A0A045JJU1_MYCTX)
Reaction : -
Chain : H
UniProt : A0A045JW48 (A0A045JW48_MYCTX)
Reaction : -
Chain : J
UniProt : A0A0T9D5H2 (A0A0T9D5H2_MYCTX)
Reaction : -
Chain : K
UniProt : A0A0U0S3A8
Reaction : -
Chain : L
UniProt : A0A0T7M0A0
Reaction : -
Chain : M
UniProt : A0A045IWV9 (A0A045IWV9_MYCTX)
Reaction : -
Chain : N
UniProt : A0A045IVA2 (A0A045IVA2_MYCTX)
Reaction : -
Chain : O
UniProt : A0A045JK28 (A0A045JK28_MYCTX)
Reaction : -
Chain : P
UniProt : A0A045IDD2 (A0A045IDD2_MYCTX)
Reaction : -
Chain : Q
UniProt : A0A045KJ85 (A0A045KJ85_MYCTX)
Reaction : -
Chain : R
UniProt : A0A1N6MHB1
Reaction : -
Chain : S
UniProt : A0A045H760 (A0A045H760_MYCTX)
Reaction : -
Chain : T
UniProt : A0A045J9M3 (A0A045J9M3_MYCTX)
Reaction : -
Chain : U
UniProt : A0A045IXU4 (A0A045IXU4_MYCTX)
Reaction : -
Chain : V
UniProt : A0A045JAK4 (A0A045JAK4_MYCTX)
Reaction : -
Chain : W
UniProt : A0A045K0G1 (A0A045K0G1_MYCTX)
Reaction : -
Chain : X
UniProt : A0A045IDB8 (A0A045IDB8_MYCTX)
Reaction : -
Chain : Y
UniProt : A0A045IQ64 (A0A045IQ64_MYCTX)
Reaction : -
Chain : Z
UniProt : A0A045H4J2 (A0A045H4J2_MYCTX)
Reaction : -