Het-PDB Navi2 (PDB: 5NGQ)

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Ligands
Code	Name		Style	Show	Link
CA	Calcium ion				PoSSuM
ZDC	3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid				PoSSuM

Glycosylation
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Download interaction data: 5NGQ

Code :

5NGQ PDBj RCSB PDB PDBe

Header :

SUGAR BINDING PROTEIN

Title :

Bicyclic antimicrobial peptides

Release Data :

2017-08-23

Compound :

mol_id	molecule	chains	synonym
1	Fucose-binding lectin II (PA-IIL)	A,B,C,D	Fucose-binding lectin PA-IIL

mol_id	molecule	chains
2	DLS-PRO-ALD-CYS-TYD-ALA-CYD-LYS-ALA	E

mol_id	molecule	chains
3	Fragment of bicycle	F,G,H

Source :

mol_id	organism_scientific	expression_system
1	Pseudomonas aeruginosa (taxid:287)	Escherichia coli (taxid:562)
	gene: lecB, PAERUG_E15_London_28_01_14_00983, PAERUG_P32_London_17_VIM_2_10_11_00423, PAMH19_1713

mol_id	organism_scientific
2	Synthetic construct (taxid:32630)
	synthetic: yes

mol_id	organism_scientific
3	Synthetic construct (taxid:32630)
	synthetic: yes

Authors :

Di Bonaventura, I., Jin, X., Visini, R., Michaud, G., Robadey, M., Koehler, T., van Delden, C., Stocker, A., Darbre, T., Reymond, J.-L.

Keywords :

Bycicle, Antimicrobial peptide, Pseudomonas aeruginosa, Biofilm, Sugar binding protein

Exp. method :

X-RAY DIFFRACTION ( 1.17 Å )

Citation :

Chemical space guided discovery of antimicrobial bridged bicyclic peptides against Pseudomonas aeruginosa and its biofilms.

Di Bonaventura, I.,Jin, X.,Visini, R. et al.
(2017) Chem Sci 8 : 6784 - 6798

PDB ID: 5NGQ