Brand  (β version)

PDB ID: 5NES

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Ligands
Code Name Style Show Link
8VH 1,3-dimethylbenzene PoSSuM
CA Calcium ion PoSSuM
ZDC 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid PoSSuM
Non-standard Residues
Code Name Show
DCY D-cysteine
DLY D-lysine
DTR D-tryptophan
Glycosylation
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Structure summary

Code : 5NES   PDBj   RCSB PDB   PDBe
Header : SUGAR BINDING PROTEIN
Title : Discovery, crystal structures and atomic force microscopy study of thioether ligated D,L-cyclic antimicrobial peptides against multidrug resistant Pseudomonas aeruginosa
Release Data : 2017-09-13
Compound :
mol_id molecule chains synonym
1 Fucose-binding lectin II (PA-IIL) A,B,C,D Fucose-binding lectin PA-IIL
mol_id molecule chains
2 CYD-TRP-TRD-LYS-LYD-LYS-LYD-LYS-TRD-TRP-CYD E
Source :
mol_id organism_scientific expression_system
1 Pseudomonas aeruginosa  (taxid:287) Escherichia coli  (taxid:562)
gene: lecB, PAERUG_E15_London_28_01_14_00983, PAERUG_P32_London_17_VIM_2_10_11_00423, PAMH19_1713
mol_id organism_scientific
2 Synthetic construct  (taxid:32630)
synthetic: yes
Authors : Reymond, J.-L., Darbre, T., Stocker, A., Hong, W., van Delden, C., Koehler, T., Luscher, A., Visini, R., Fu, Y., Di Bonaventura, I., He, R.
Keywords : Cyclic peptides, Antimicrobials, Pseudomonas aeruginosa, sugar binding protein
Exp. method : X-RAY DIFFRACTION ( 1.606 Å )
Citation :

Design, crystal structure and atomic force microscopy study of thioether ligated d,l-cyclic antimicrobial peptides against multidrug resistant Pseudomonas aeruginosa.

He, R.,Di Bonaventura, I.,Visini, R.  et al.
(2017)  Chem Sci  8 : 7464 - 7475

PubMed: 29163899
DOI: 10.1039/c7sc01599b

Reaction

Chain : A, B, C, D
UniProt : A0A069Q9V4 (A0A069Q9V4_PSEAI)
Reaction : -