Brand  (β version)

PDB ID: 5L8R

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Ligands
Code Name Style Show Link
BCR Beta-carotene PoSSuM
CA Calcium ion PoSSuM
CHL Chlorophyll B PoSSuM
CL0 Chlorophyll a isomer PoSSuM
CLA Chlorophyll a PoSSuM
LHG 1,2-dipalmitoyl-phosphatidyl-glycerole PoSSuM
LMG 1,2-distearoyl-monogalactosyl-diglyceride PoSSuM
LUT (3r,3'R,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol PoSSuM
PQN Phylloquinone PoSSuM
SF4 Iron/sulfur cluster PoSSuM
XAT (3s,5r,6s,3'S,5'R,6'S)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol PoSSuM
ZEX (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol PoSSuM
DGD Digalactosyl diacyl glycerol (dgdg) PoSSuM
LMT Dodecyl-beta-D-maltoside PoSSuM
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 5L8R   PDBj   RCSB PDB   PDBe
Header : OXIDOREDUCTASE
Title : The structure of plant photosystem I super-complex at 2.6 angstrom resolution.
Release Data : 2017-03-15
Compound :
mol_id molecule chains
1 Lhca1 1
mol_id molecule chains
2 Chlorophyll a-b binding protein, chloroplastic 2
mol_id molecule chains synonym
3 Chlorophyll a-b binding protein 3, chloroplastic 3 LHCII type III CAB-3
mol_id molecule chains synonym
4 Chlorophyll a-b binding protein P4, chloroplastic 4 LHCI type III CAB-P4
mol_id molecule chains synonym
5 Photosystem I P700 chlorophyll a apoprotein A1 A PSI-A,PsaA
ec: 1.97.1.12
mol_id molecule chains synonym
6 Photosystem I P700 chlorophyll a apoprotein A2 B PSI-B,PsaB
ec: 1.97.1.12
mol_id molecule chains synonym
7 Photosystem I iron-sulfur center C 9 kDa polypeptide,PSI-C,Photosystem I subunit VII,PsaC
ec: 1.97.1.12
mol_id molecule chains
8 PsaD D
mol_id molecule chains
9 Putative uncharacterized protein E
mol_id molecule chains
10 Photosystem I reaction center subunit III F
mol_id molecule chains
11 PsaG G
mol_id molecule chains
12 Photosystem I reaction center subunit VI H
mol_id molecule chains synonym
13 Photosystem I reaction center subunit VIII I PSI-I
mol_id molecule chains synonym
14 Photosystem I reaction center subunit IX J PSI-J
mol_id molecule chains
15 Photosystem I reaction center subunit X psaK K
mol_id molecule chains
16 Putative uncharacterized protein L
Source :
mol_id organism_scientific organism_common
1 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
2 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
3 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
4 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
5 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
6 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
7 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
8 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
9 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
10 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
11 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
12 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
13 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
14 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
15 Pisum sativum  (taxid:3888) Garden pea
mol_id organism_scientific organism_common
16 Pisum sativum  (taxid:3888) Garden pea
Authors : Mazor, Y., Borovikova, A., Caspy, I., Nelson, N.
Keywords : photosynthesis, membrane complex, chlorophyll, light harvesting, oxidoreductase
Exp. method : X-RAY DIFFRACTION ( 2.600 Å )
Citation :

Structure of the plant photosystem I supercomplex at 2.6 angstrom resolution.

Mazor, Y.,Borovikova, A.,Caspy, I.  et al.
(2017)  Nat Plants  3 : 17014 - 17014

PubMed: 28248295
DOI: 10.1038/nplants.2017.14

Reaction

Chain : 2
UniProt : Q41038 (Q41038_PEA)
Reaction : -
Chain : 3
UniProt : Q32904 (CB23_PEA)
Reaction : -
Chain : 4
UniProt : Q9SQL2 (CB24_PEA)
Reaction : -
Chain : A
UniProt : P05310 (PSAA_PEA)
Reaction: EC: Evidence:
Physiological Direction:
hnu + oxidized [2Fe-2S]-[ferredoxin] + reduced [plastocyanin] = oxidized [plastocyanin] + reduced [2Fe-2S]-[ferredoxin] 1.97.1.12 HAMAP- Rule:MF_00458
-
Chain : B
UniProt : A0A0F6NGI2 (A0A0F6NGI2_PEA)
Reaction: EC: Evidence:
Physiological Direction:
hnu + oxidized [2Fe-2S]-[ferredoxin] + reduced [plastocyanin] = oxidized [plastocyanin] + reduced [2Fe-2S]-[ferredoxin] 1.97.1.12 ARBA:ARBA00000994, HAMAP- Rule:MF_00482
-
Chain : C
UniProt : P10793 (PSAC_PEA)
Reaction: EC: Evidence:
Physiological Direction:
hnu + oxidized [2Fe-2S]-[ferredoxin] + reduced [plastocyanin] = oxidized [plastocyanin] + reduced [2Fe-2S]-[ferredoxin] 1.97.1.12 HAMAP- Rule:MF_01303
-
Chain : E
UniProt : E1C9K6 (E1C9K6_PEA)
Reaction : -
Chain : F
UniProt : A0A0M3KL12 (A0A0M3KL12_PEA)
Reaction : -
Chain : H
UniProt : A0A0M3KL10 (A0A0M3KL10_PEA)
Reaction : -
Chain : I
UniProt : P17227 (PSAI_PEA)
Reaction : -
Chain : J
UniProt : D5MAL3 (D5MAL3_PEA)
Reaction : -
Chain : K
UniProt : E1C9L3 (E1C9L3_PEA)
Reaction : -
Chain : L
UniProt : E1C9L1 (E1C9L1_PEA)
Reaction : -