Het-PDB Navi2 (PDB: 5I8M)

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Ligands
Code	Name		Style	Show	Link
CA	Calcium ion				PoSSuM
ZDC	3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid				PoSSuM

Non-standard Residues
Code	Name	Show
DLS	Di-acetyl-lysine

Glycosylation
Code	Name	Emphasize

Modification
Code	Name	Show
NH2	Amino group

Download interaction data: 5I8M

Code :

5I8M PDBj RCSB PDB PDBe

Header :

SUGAR BINDING PROTEIN

Title :

Bicyclic antimibrocial peptides

Release Data :

2017-08-23

Compound :

mol_id	molecule	chains	synonym
1	Fucose-binding lectin	A,B,C,D	Fucose-binding lectin II (PA-IIL),Fucose-binding lectin PA-IIL,Photopexin A

mol_id	molecule	chains
2	DLS-LYS-CYS-LYS-LEU-CYS-LEU-LYS-NH2	E

Source :

mol_id	organism_scientific	expression_system
1	Pseudomonas aeruginosa (taxid:287)	Escherichia coli (taxid:562)
	gene: lecB, AN280_27645, AN399_05715, AN400_17270, AN446_25935, AN447_15925, AN451_21855, AN453_22575, AN455_18155, AN456_19070, AN457_11175, AN458_15745, AN460_27980, AN462_17515, AOD73_08535, AOX61_23230, AOX62_26425, APG03_22020, APG04_23970, APG05_03535, APG06_28020, APG07_27985, ATC05_02360, ERS445055_01627, PA8380_17510, PAERUG_E15_London_28_01_14_00983, PAERUG_P32_London_17_VIM_2_10_11_00423, PAMH19_1713, PAO1OR1608

mol_id	organism_scientific
2	Synthetic construct (taxid:32630)
	synthetic: yes

Authors :

Di Bonaventura, I., Jin, X., Visini, R., Michaud, G., Robadey, M., Koehler, T., van Delden, C., Stocker, A., Darbre, T., Reymond, J.-L.

Keywords :

Bicycle, Antimicrobial peptide, pseudomonas aeruginosa, biofilm, sugar binding protein

Exp. method :

X-RAY DIFFRACTION ( 2.130 Å )

Citation :

Chemical space guided discovery of antimicrobial bridged bicyclic peptides against Pseudomonas aeruginosa and its biofilms.

Di Bonaventura, I.,Jin, X.,Visini, R. et al.
(2017) Chem Sci 8 : 6784 - 6798

PDB ID: 5I8M