Brand  (β version)

PDB ID: 5GWZ

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Ligands
Code Name Style Show Link
Non-standard Residues
Code Name Show
02J 5-methyl-1,2-oxazole-3-carboxylic acid
PJE (E,4s)-4-azanyl-5-[(3s)-2-oxidanylidenepyrrolidin-3-yl]pent-2-enoic acid
Glycosylation
Code Name Emphasize
Modification
Code Name Show
010 Phenylmethanol

Structure summary

Code : 5GWZ   PDBj   RCSB PDB   PDBe
Header : HYDROLASE/HYDROLASE INHIBITOR
Title : The structure of Porcine epidemic diarrhea virus main protease in complex with an inhibitor
Release Data : 2017-03-29
Compound :
mol_id molecule chains synonym
1 PEDV main protease B,A Peptidase C30
ec: 3.4.22.-
mol_id molecule chains
2 N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE D,E
Source :
mol_id organism_scientific organism_common expression_system
1 Porcine epidemic diarrhea virus CV777  (taxid:229032) PEDV Escherichia coli  (taxid:562)
strain: CV777
gene: 1a
mol_id organism_scientific
2 Synthetic construct  (taxid:32630)
synthetic: yes
Authors : Wang, F., Chen, C., Yang, K., Liu, X., Liu, H., Xu, Y., Chen, X., Liu, X., Cai, Y., Yang, H.
Keywords : PEDV, Main protease, inhibitor, HYDROLASE-HYDROLASE INHIBITOR complex
Exp. method : X-RAY DIFFRACTION ( 2.444 Å )
Citation :

Michael Acceptor-Based Peptidomimetic Inhibitor of Main Protease from Porcine Epidemic Diarrhea Virus

Wang, F.,Chen, C.,Yang, K.  et al.
(2017)  J. Med. Chem.  60 : 3212 - 3216

PubMed: 28287727
DOI: 10.1021/acs.jmedchem.7b00103

Reaction

Chain : B, A
UniProt : P0C6V6 (R1A_PEDV7)
Reaction: EC: Evidence:
Physiological Direction:
[Papain-like protease nsp3]
Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76- residue protein attached to proteins as an intracellular targeting signal). 		3.4.19.12 -
-
[RNA-capping enzyme subunit nsp9]
a 5'-end diphospho-ribonucleoside in mRNA + GTP + H(+) = a 5'- end (5'-triphosphoguanosine)-(ribonucleoside) in mRNA + diphosphate 		2.7.7.50 UniProtKB:P0DTC1
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