PDB ID: 5DO4
Hetero Atom Contents
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Color scheme of protein:
Code | Name | Style | Show | Link | |
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0G6 | D-phenylalanyl-N-[(2s,3s)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide | PoSSuM | |||
CA | Calcium ion | PoSSuM | |||
EDO | 1,2-ethanediol | PoSSuM | |||
GOL | Glycerol | PoSSuM | |||
MG | Magnesium ion | PoSSuM | |||
MRD | (4r)-2-methylpentane-2,4-diol | PoSSuM |
Code | Name | Show |
---|---|---|
CFZ | 2'-deoxy-2'-fluorocytidine 5'-(dihydrogen phosphate) | |
UFT | 2'-deoxy-2'-fluorouridine 5'-(dihydrogen phosphate) | |
UMS | 2'-methylselenyl-2'-deoxyuridine-5'-phosphate |
Code | Name | Emphasize |
---|---|---|
NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose |
Code | Name | Show |
---|---|---|
ADS | Adenosine-5'-(dithio)phosphate |
Download interaction data: 5DO4
Structure summary
Code : | 5DO4 PDBj RCSB PDB PDBe | ||||||||||||||||||||||||||||||||
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Header : | Hydrolase/RNA | ||||||||||||||||||||||||||||||||
Title : | Thrombin-RNA aptamer complex | ||||||||||||||||||||||||||||||||
Release Data : | 2016-09-14 | ||||||||||||||||||||||||||||||||
Compound : |
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Source : |
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Authors : | Pallan, P.S., Egli, M. | ||||||||||||||||||||||||||||||||
Keywords : | Thrombin-RNA aptamer, phosphorodithioate RNA, PS2-RNA, PS2 linkage, Hydrolase-RNA complex | ||||||||||||||||||||||||||||||||
Exp. method : | X-RAY DIFFRACTION ( 1.8590 Å ) | ||||||||||||||||||||||||||||||||
Citation : |
Evoking picomolar binding in RNA by a single phosphorodithioate linkage.
Abeydeera, N.D.,Egli, M.,Cox, N.
et al.
PubMed: 27566147 |
Reaction
Chain : | H | ||||||||
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UniProt : | P00734 (THRB_HUMAN) | ||||||||
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