Brand  (β version)

PDB ID: 5D0F

Hetero Atom Contents

  The number of atoms exceeds 100,000.
  So, it can not be displayed here.

Select unit:

Select hetatm:   

close
information
centroid:
interaction residue:

Select chain:   Sequence  

Data format:   

Color scheme of protein:

Ligands
Code Name Style Show Link
GLC Alpha-D-glucopyranose PoSSuM
: Polysaccharide
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
Modification
Code Name Show

Structure summary

Code : 5D0F   PDBj   RCSB PDB   PDBe
Header : SUGAR BINDING PROTEIN
Title : Crystal Structure of the Candida Glabrata Glycogen Debranching Enzyme (E564Q) in complex with maltopentaose
Release Data : 2016-05-18
Compound :
mol_id molecule chains
1 Uncharacterized protein A,B
mutation: E564Q
Source :
mol_id organism_scientific organism_common expression_system
1 Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)  (taxid:284593) Yeast Escherichia coli  (taxid:562)
strain: ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65
gene: CAGL0G09977g
expression_system_strain: BL21 Rosetta (DE3)
expression_system_vector_type: plasmid
expression_system_plasmid: pET26b
Authors : Zhai, L., Xiang, S.
Keywords : TIM barrel, (alpha/alpha)6 barrel, hydrolase, SUGAR BINDING PROTEIN
Exp. method : X-RAY DIFFRACTION ( 3.300 Å )
Citation :

Crystal structure of glycogen debranching enzyme and insights into its catalysis and disease-causing mutations.

Zhai, L.,Feng, L.,Xia, L.  et al.
(2016)  Nat Commun  7 : 11229 - 11229

PubMed: 27088557
DOI: 10.1038/ncomms11229

Reaction

Chain : A, B
UniProt : Q6FSK0 (Q6FSK0_CANGA)
Reaction: EC: Evidence:
Physiological Direction:
Hydrolysis of (1->6)-alpha-D-glucosidic branch linkages in glycogen phosphorylase limit dextrin. 3.2.1.33 ARBA:ARBA00000927
-
Transfers a segment of a (1->4)-alpha-D-glucan to a new position in an acceptor, which may be glucose or a (1->4)-alpha-D- glucan. 2.4.1.25 ARBA:ARBA00000439
-