Brand  (β version)

PDB ID: 5BR8

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Ligands
Code Name Style Show Link
MG Magnesium ion PoSSuM
PAR Paromomycin PoSSuM
ZN Zinc ion PoSSuM
Non-standard Residues
Code Name Show
0TD (3s)-3-(methylsulfanyl)-L-aspartic acid
2MG 2n-methylguanosine-5'-monophosphate
4OC 4n,o2'-methylcytidine-5'-monophosphate
5MC 5-methylcytidine-5'-monophosphate
G7M N7-methyl-guanosine-5'-monophosphate
M2G N2-dimethylguanosine-5'-monophosphate
MA6 6n-dimethyladenosine-5'-monophoshate
PSU Pseudouridine-5'-monophosphate
UR3 3-methyluridine-5'-monophoshate
Glycosylation
Code Name Emphasize
Modification
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Structure summary

Code : 5BR8   PDBj   RCSB PDB   PDBe
Header : RIBOSOME
Title : Ambient-temperature crystal structure of 30S ribosomal subunit from Thermus thermophilus in complex with paromomycin
Release Data : 2015-11-18
Compound :
mol_id molecule chains
1 16S ribosomal RNA A
mol_id molecule chains
2 30S ribosomal protein S2 B
mol_id molecule chains
3 30S ribosomal protein S3 C
mol_id molecule chains
4 30S ribosomal protein S4 D
mol_id molecule chains
5 30S ribosomal protein S5 E
mol_id molecule chains synonym
6 30S ribosomal protein S6 F TS9
mol_id molecule chains
7 30S ribosomal protein S7 G
mol_id molecule chains
8 30S ribosomal protein S8 H
mol_id molecule chains
9 30S ribosomal protein S9 I
mol_id molecule chains
10 30S ribosomal protein S10 J
mol_id molecule chains
11 30S ribosomal protein S11 K
mol_id molecule chains
12 30S ribosomal protein S12 L
mol_id molecule chains
13 30S ribosomal protein S13 M
mol_id molecule chains
14 30S ribosomal protein S14 type Z N
mol_id molecule chains
15 30S ribosomal protein S15 O
mol_id molecule chains
16 30S ribosomal protein S16 P
mol_id molecule chains
17 30S ribosomal protein S17 Q
mol_id molecule chains
18 30S ribosomal protein S18 R
mol_id molecule chains
19 30S ribosomal protein S19 S
mol_id molecule chains
20 30S ribosomal protein S20 T
mol_id molecule chains synonym
21 30S ribosomal protein Thx U S31
Source :
mol_id organism_scientific
1 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
2 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
3 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
4 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
5 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
6 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
7 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
8 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
9 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
10 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
11 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
12 Thermus thermophilus  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
13 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
14 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
15 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
16 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
17 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
18 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
19 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
20 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
mol_id organism_scientific
21 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)  (taxid:300852)
strain: HB8 / ATCC 27634 / DSM 579
Authors : Sierra, R.G., Gati, C., Laksmono, H., Dao, E.H., Gul, S., Fuller, F., Kern, J., Chatterjee, R., Ibrahim, M., Brewster, A., Young, I.D., Michels-Clark, T., Aquila, A., Mengning, L., Hunter, M.S., Koglin, J.E., Boutet, S., Junco, E.A., Hayes, B., Bogan, M.J., Hampton, C.Y., Puglisi, E.V., Sauter, N.K., Stan, C.A., Zouni, A., Yano, J., Yachandra, V.K., Soltis, S.M., Puglisi, J.D., DeMirci, H.
Keywords : 30S ribosomal subunit, Paromomycin, Ambient temperature, SFX, electrospinning, RIBOSOME
Exp. method : X-RAY DIFFRACTION ( 3.400 Å )
Citation :

Ambient-temperature crystal structure of 30S ribosomal subunit from Thermus thermophilus in complex with paromomycin

Sierra, R.G.,Gati, C.,Laksmono, H.  et al.
To Be Published 

Reaction

Chain : B
UniProt : P80371 (RS2_THET8)
Reaction : -
Chain : C
UniProt : P80372 (RS3_THET8)
Reaction : -
Chain : D
UniProt : P80373 (RS4_THET8)
Reaction : -
Chain : E
UniProt : Q5SHQ5 (RS5_THET8)
Reaction : -
Chain : F
UniProt : Q5SLP8 (RS6_THET8)
Reaction : -
Chain : G
UniProt : P17291 (RS7_THET8)
Reaction : -
Chain : H
UniProt : Q5SHQ2 (RS8_THET8)
Reaction : -
Chain : I
UniProt : P80374 (RS9_THET8)
Reaction : -
Chain : J
UniProt : Q5SHN7 (RS10_THET8)
Reaction : -
Chain : K
UniProt : P80376 (RS11_THET8)
Reaction : -
Chain : L
UniProt : Q5SHN3 (RS12_THET8)
Reaction : -
Chain : M
UniProt : P80377 (RS13_THET8)
Reaction : -
Chain : N
UniProt : Q5SHQ1 (RS14Z_THET8)
Reaction : -
Chain : O
UniProt : Q5SJ76 (RS15_THET8)
Reaction : -
Chain : P
UniProt : Q5SJH3 (RS16_THET8)
Reaction : -
Chain : Q
UniProt : Q5SHP7 (RS17_THET8)
Reaction : -
Chain : R
UniProt : Q5SLQ0 (RS18_THET8)
Reaction : -
Chain : S
UniProt : Q5SHP2 (RS19_THET8)
Reaction : -
Chain : T
UniProt : P80380 (RS20_THET8)
Reaction : -
Chain : U
UniProt : Q5SIH3 (RSHX_THET8)
Reaction : -