Brand  (β version)

PDB ID: 5B5M

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Ligands
Code Name Style Show Link
HEM Protoporphyrin ix containing Fe PoSSuM
SR Strontium ion PoSSuM
BCL Bacteriochlorophyll a PoSSuM
BPH Bacteriopheophytin a PoSSuM
UQ8 Ubiquinone-8 PoSSuM
PEF Di-palmitoyl-3-sn-phosphatidylethanolamine PoSSuM
FE Fe (III) ion PoSSuM
MQ8 Menaquinone 8 PoSSuM
CRT Spirilloxanthin PoSSuM
PO4 Phosphate ion PoSSuM
PGW (1r)-2-{[(S)-{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9z)-octadec-9-enoate PoSSuM
Non-standard Residues
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Glycosylation
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Structure summary

Code : 5B5M   PDBj   RCSB PDB   PDBe
Header : PHOTOSYNTHESIS
Title : Crystal structure of the Sr-substituted LH1-RC complex from Tch. tepidum
Release Data : 2017-03-22
Compound :
mol_id molecule chains
1 Photosynthetic reaction center cytochrome c subunit C,o
fragment: UNP RESIDUES 1-333
mol_id molecule chains
2 Photosynthetic reaction center L subunit L,x
mol_id molecule chains
3 Photosynthetic reaction center M subunit M,y
fragment: UNP RESIDUES 1-319
mol_id molecule chains
4 Photosynthetic reaction center H subunit H,t
mol_id molecule chains
5 LH1 alpha polypeptide A,D,F,I,K,O,Q,S,U,W,Y,1,3,5,7,9,m,p,r,u,w,AA,AC,AE,AG,AI,AK,d,f,h,j,l
mol_id molecule chains
6 LH1 beta polypeptide B,E,G,J,N,P,R,T,V,X,Z,2,4,6,8,0,n,q,s,v,z,AB,AD,AF,AH,AJ,AL,e,g,i,k,c
Source :
mol_id organism_scientific
1 Thermochromatium tepidum  (taxid:1050)
mol_id organism_scientific
2 Thermochromatium tepidum  (taxid:1050)
mol_id organism_scientific
3 Thermochromatium tepidum  (taxid:1050)
mol_id organism_scientific
4 Thermochromatium tepidum  (taxid:1050)
mol_id organism_scientific
5 Thermochromatium tepidum  (taxid:1050)
mol_id organism_scientific
6 Thermochromatium tepidum  (taxid:1050)
Authors : Wang-Otomo, Z.-Y., Yu, L.-J.
Keywords : Bacterial photosynthesis, Light-harvesting complex, PHOTOSYNTHESIS
Exp. method : X-RAY DIFFRACTION ( 3.300 Å )
Citation :

Structural Basis for the Unusual Qy Red-Shift and Enhanced Thermostability of the LH1 Complex from Thermochromatium tepidum.

Yu, L.J.,Kawakami, T.,Kimura, Y.  et al.
(2016)  Biochemistry  55 : 6495 - 6504

PubMed: 27933779
DOI: 10.1021/acs.biochem.6b00742

Reaction

Chain : C, o
UniProt : D2Z0P5 (CYCR_THETI)
Reaction : -
Chain : L, x
UniProt : D2Z0P3 (D2Z0P3_THETI)
Reaction : -
Chain : M, y
UniProt : A8ASG6 (A8ASG6_THETI)
Reaction : -
Chain : H, t
UniProt : D2Z0P9 (D2Z0P9_THETI)
Reaction : -
Chain : A, D, F, I, K, O, Q, S, U, W, Y, 1, 3, 5, 7, 9, m, p, r, u, w, AA, AC, AE, AG, AI, AK, d, f, h, j, l
UniProt : D2Z0P2 (D2Z0P2_THETI)
Reaction : -
Chain : B, E, G, J, N, P, R, T, V, X, Z, 2, 4, 6, 8, 0, n, q, s, v, z, AB, AD, AF, AH, AJ, AL, e, g, i, k, c
UniProt : D2Z0P1 (D2Z0P1_THETI)
Reaction : -