Brand  (β version)

PDB ID: 4WWK

Hetero Atom Contents

  The number of atoms exceeds 100,000.
  So, it can not be displayed here.

Select unit:

Select hetatm:   

close
information
centroid:
interaction residue:

Select chain:   Sequence  

Data format:   

Color scheme of protein:

Ligands
Code Name Style Show Link
JLS (15z)-N-[(2s,3s,4r)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]tetracos-15-enamide PoSSuM
Non-standard Residues
Code Name Show
Glycosylation
Code Name Emphasize
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose
Modification
Code Name Show

Structure summary

Code : 4WWK   PDBj   RCSB PDB   PDBe
Header : IMMUNE SYSTEM
Title : Crystal structure of human TCR Alpha Chain-TRAV12-3, Beta Chain-TRBV6-5, Antigen-presenting molecule CD1d, and Beta-2-microglobulin
Release Data : 2016-02-03
Compound :
mol_id molecule chains
1 TCR Alpha Chain-TRAV12-3 A
mol_id molecule chains
2 TCR Beta Chain-TRBV6-5 B
mol_id molecule chains synonym
3 Antigen-presenting glycoprotein CD1d C R3G1
mol_id molecule chains
4 Beta-2-microglobulin D
Source :
mol_id organism_scientific expression_system
1 Homo sapiens  (taxid:9606) Escherichia coli  (taxid:562)
expression_system_vector_type: plasmid
mol_id organism_scientific expression_system
2 Homo sapiens  (taxid:9606) Escherichia coli  (taxid:562)
expression_system_vector_type: plasmid
mol_id organism_scientific organism_common expression_system
3 Homo sapiens  (taxid:9606) Human Trichoplusia ni  (taxid:7111)
gene: CD1D
expression_system_vector_type: Baculovirus
expression_system_plasmid: pFastBac Dual
mol_id organism_scientific organism_common expression_system
4 Homo sapiens  (taxid:9606) Human Trichoplusia ni  (taxid:7111)
gene: B2M, CDABP0092, HDCMA22P
expression_system_vector_type: Baculovirus
expression_system_plasmid: pFastBac Dual
Authors : Le Nours, J., Praveena, T., Pellicci, D.G., Gherardin, N.A., Lim, R.T., Besra, G., Keshipeddy, A., Richardson, S.K., Howell, A.R., Gras, S., Godfrey, D.I., Rossjohn, J., Uldrich, A.P.
Keywords : Innate Immunity, NKT, IMMUNE SYSTEM
Exp. method : X-RAY DIFFRACTION ( 3.10 Å )
Citation :

Atypical natural killer T-cell receptor recognition of CD1d-lipid antigens.

Le Nours, J.,Praveena, T.,Pellicci, D.G.  et al.
(2016)  Nat Commun  7 : 10570 - 10570

PubMed: 26875526
DOI: 10.1038/ncomms10570

Reaction

Chain : C
UniProt : P15813 (CD1D_HUMAN)
Reaction : -
Chain : D
UniProt : P61769 (B2MG_HUMAN)
Reaction : -