Brand  (β version)

PDB ID: 4L6C

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Ligands
Code Name Style Show Link
0BT 1-{2-deoxy-3,5-O-[(4-iodophenyl)(phosphono)methylidene]-beta-D-threo-pentofuranosyl}-5-methylpyrimidine-2,4(1h,3h)-dione PoSSuM
EDO 1,2-ethanediol PoSSuM
GOL Glycerol PoSSuM
MG Magnesium ion PoSSuM
PO4 Phosphate ion PoSSuM
Non-standard Residues
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Structure summary

Code : 4L6C   PDBj   RCSB PDB   PDBe
Header : HYDROLASE/HYDROLASE INHIBITOR
Title : Crystal structure of human mitochondrial deoxyribonucleotidase in complex with the inhibitor pib-T
Release Data : 2014-09-10
Compound :
mol_id molecule chains synonym
1 5'(3')-deoxyribonucleotidase, mitochondrial A 5',3'-nucleotidase, mitochondrial, Deoxy-5'-nucleotidase 2, dNT-2
ec: 3.1.3.-
fragment: UNP residues 32-228
Source :
mol_id organism_scientific organism_common expression_system
1 Homo sapiens  (taxid:9606) Human Escherichia coli  (taxid:469008)
gene: DNT2, NT5M
expression_system_strain: BL21(DE3)
expression_system_vector_type: PLASMID
expression_system_plasmid: PMCSG7
Authors : Pachl, P., Brynda, J., Rezacova, P.
Keywords : 5'-NUCLEOTIDASE, MITOCHONDRIA, PROTEIN CONFORMATION, SEQUENCE HOMOLOGY, HAD-LIKE, HYDROLASE, DEPHOSPHORYLATION, PHOSPHORYLATION, HYDROLASE-HYDROLASE INHIBITOR complex
Exp. method : X-RAY DIFFRACTION ( 1.80 Å )
Citation :

Conformationally constrained nucleoside phosphonic acids - potent inhibitors of human mitochondrial and cytosolic 5'(3')-nucleotidases.

Simak, O.,Pachl, P.,Fabry, M.  et al.
(2014)  Org.Biomol.Chem.  12 : 7971 - 7982

PubMed: 25178098
DOI: 10.1039/c4ob01332h

Reaction

Chain : A
UniProt : Q9NPB1 (NT5M_HUMAN)
Reaction : -