Het-PDB Navi2 (PDB: 4F7E)

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Ligands
Code	Name		Style	Show	Link
0SH	N-[(2s,3s,4r)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]hexadecanamide				PoSSuM
SO4	Sulfate ion				PoSSuM

Non-standard Residues
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Glycosylation
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NAG	2-acetamido-2-deoxy-beta-D-glucopyranose

Modification
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Download interaction data: 4F7E

Code :

4F7E PDBj RCSB PDB PDBe

Header :

IMMUNE SYSTEM

Title :

Crystal structure of bovine CD1d with bound C16:0-alpha-galactosyl ceramide

Release Data :

2012-11-14

Compound :

mol_id	molecule	chains	synonym
1	CD1D antigen, d polypeptide	A	T cell surface glycoprotein CD1d antigen
	fragment: UNP residues 129-405

mol_id	molecule	chains	synonym
2	Beta-2-microglobulin	B	Lactollin
	fragment: UNP residues 21-118

Source :

mol_id	organism_scientific	organism_common	expression_system
1	Bos taurus (taxid:9913)	Bovine	Spodoptera frugiperda (taxid:7108)
	gene: CD1D expression_system_common: Fall armyworm expression_system_strain: SF9 expression_system_vector_type: baculovirus expression_system_plasmid: pBACpHp10

mol_id	organism_scientific	organism_common	expression_system
2	Bos taurus (taxid:9913)	Bovine	Spodoptera frugiperda (taxid:7108)
	gene: B2M expression_system_common: Fall armyworm expression_system_strain: SF9 expression_system_vector_type: baculovirus expression_system_plasmid: pBACpHp10

Authors :

Wang, J., Zajonc, D.M.

Keywords :

protein-glycolipid complex, MHC-fold, Ig-fold, antigen presentation, TCR, membrane, IMMUNE SYSTEM

Exp. method :

X-RAY DIFFRACTION ( 2.400 Å )

Citation :

Crystal Structures of Bovine CD1d Reveal Altered αGalCer Presentation and a Restricted A' Pocket Unable to Bind Long-Chain Glycolipids.

Wang, J.,Guillaume, J.,Pauwels, N. et al.
(2012) Plos One 7 : e47989 - e47989

PDB ID: 4F7E