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Ligands
Code Name Style Show Link
0R7 [[(2s,5r)-5-[4-azanyl-5-[2-(4-ethynylphenyl)ethynyl]-2-oxidanylidene-pyrimidin-1-yl]oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
CA Calcium ion
EDO 1,2-ethanediol
GOL Glycerol
MG Magnesium ion
PGE Triethylene glycol
Non-standard Residues
Code Name Show
0R8 [(2s,5r)-5-{4-amino-5-[(4-ethynylphenyl)ethynyl]-2-oxopyrimidin-1(2h)-yl}tetrahydrofuran-2-yl]methyl dihydrogen phosphate
Glycosylation
Code Name Emphasize
Modification
Code Name Show
Code : 4ELV   PDBj   RCSB PDB   PDBe
Header : TRANSFERASE/DNA
Title : Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing modified pyrimidines
Release Data : 2013-04-24
Compound :
mol_id molecule chains synonym
1 DNA polymerase I, thermostable A Taq polymerase 1
ec: 2.7.7.7
fragment: UNP RESIDUES 293-832
mol_id molecule chains
2 DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(0R8))-3') B
other_details: DNA primer
mol_id molecule chains
3 DNA (5'-D(*AP*AP*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3') C
other_details: DNA template
Source :
mol_id organism_scientific expression_system
1 Thermus aquaticus  (taxid:271) Escherichia coli  (taxid:562)
gene: polA, pol1
mol_id organism_scientific
2 Synthetic  (taxid:32630)
synthetic: yes
other_details: DNA synthesizer
mol_id organism_scientific
3 Synthetic  (taxid:32630)
synthetic: yes
other_details: DNA synthesizer
Authors : Marx, A., Diederichs, K., Obeid, S.
Keywords : DNA polymerase, modified nucleotides, A family, DNA synthesis, rigid linker, elongation of modified DNA, non-natural nucleotide, TRANSFERASE-DNA complex
Exp. method : X-RAY DIFFRACTION ( 1.900 Å )
Citation :

Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing modified pyrimidines

Obeid, S.,Bu kamp, H.,Welte, W.  et al.
To be Published 

Chain : A
UniProt : P19821 (DPO1_THEAQ)
Reaction: EC: Evidence:
Physiological Direction:
a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1) 2.7.7.7 -
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