Het-PDB Navi2 (PDB: 4DVR)

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Ligands
Code	Name		Style	Show	Link
0LY	N-(4-bromophenyl)-N'-(2,2,6,6-tetramethylpiperidin-4-yl)ethanediamide				PoSSuM

Non-standard Residues
Code	Name	Show

Glycosylation
Code	Name	Emphasize
NAG	2-acetamido-2-deoxy-beta-D-glucopyranose

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Download interaction data: 4DVR

Code :

4DVR PDBj RCSB PDB PDBe

Header :

IMMUNE SYSTEM/TRANSCRIPTION INHIBITOR

Title :

Crystal structure of YU2 gp120 core in complex with Fab 48d and NBD-557

Release Data :

2013-02-27

Compound :

mol_id	molecule	chains	synonym
1	Envelope glycoprotein gp120	G	Env polyprotein,Env polyprotein,Env polyprotein
	fragment: unp residues 82-122; 199-297; 319-479

mol_id	molecule	chains
2	Fab 48d Light chain	L

mol_id	molecule	chains
3	Fab 48d Heavy chain	H

Source :

mol_id	organism_scientific	organism_common	expression_system
1	Human immunodeficiency virus type 1 group M subtype B (isolate YU-2) (taxid:362651)	HIV-1	Homo sapiens (taxid:9606)
	strain: isolate YU-2 gene: env expression_system_common: Human expression_system_cell_line: HEK293F expression_system_vector_type: plasmid expression_system_plasmid: pVRC8400

mol_id	organism_scientific	organism_common	expression_system
2	Homo sapiens (taxid:9606)	Human	Homo sapiens (taxid:9606)
	expression_system_common: Human

mol_id	organism_scientific	organism_common	expression_system
3	Homo sapiens (taxid:9606)	Human	Homo sapiens (taxid:9606)
	expression_system_common: Human

Authors :

Kwon, Y.D., Kwong, P.D.

Keywords :

HIV-1 gp120, CD4 binding site, NBD-557, IMMUNE SYSTEM-TRANSCRIPTION INHIBITOR complex

Exp. method :

X-RAY DIFFRACTION ( 2.5 Å )

Citation :

Crystal Structures of HIV-1 gp120 Envelope Glycoprotein in Complex with NBD Analogues That Target the CD4-Binding Site.

Kwon, Y.D.,Lalonde, J.M.,Yang, Y. et al.
(2014) Plos One 9 : e85940 - e85940

PDB ID: 4DVR