Het-PDB Navi2 (PDB: 4DKU)

The number of atoms exceeds 100,000.
So, it can not be displayed here.

Select unit:

Select hetatm:

information

centroid:

interaction residue:

Select chain: Sequence Hide other chain(s)

Data format:

Color scheme of protein:

Ligands
Code	Name		Style	Show	Link
EPE	4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid				PoSSuM
0KU	N-(4-chlorophenyl)-N'-{(S)-[5-(hydroxymethyl)-4-methyl-1,3-thiazol-2-yl][(2s)-piperidin-2-yl]methyl}ethanediamide				PoSSuM

Non-standard Residues
Code	Name	Show

Glycosylation
Code	Name	Emphasize
NAG	2-acetamido-2-deoxy-beta-D-glucopyranose

Modification
Code	Name	Show

Download interaction data: 4DKU

Code :

4DKU PDBj RCSB PDB PDBe

Header :

HYDROLASE

Title :

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with NBD-09027

Release Data :

2013-03-20

Compound :

mol_id	molecule	chains
1	HIV-1 gp120 core	A,B
	fragment: Chimera residue 44-492 mutation: V1V2 and V3 deletion, H375S

Source :

mol_id	organism_scientific	expression_system
1	Human immunodeficiency virus 1 (taxid:11676)	Homo sapiens (taxid:9606)
	strain: clade A/E 93TH057 gene: env expression_system_common: Human expression_system_cell_line: HEK293F expression_system_vector_type: plasmid expression_system_plasmid: pVRC8400

Authors :

Kwon, Y.D., Debnath, A.K., Kwong, P.D.

Keywords :

HIV-1 gp120, clade A/E, CD4 mimic, NBD-09027, HYDROLASE

Exp. method :

X-RAY DIFFRACTION ( 2.4902 Å )

Citation :

Binding mode characterization of NBD series CD4-mimetic HIV-1 entry inhibitors by X-ray structure and resistance study.

Curreli, F.,Kwon, Y.D.,Zhang, H. et al.
(2014) Antimicrob. Agents Chemother. 58 : 5478 - 5491

PDB ID: 4DKU